Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5657_RS03265 Genome accession   NZ_CP120621
Coordinates   624863..625381 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 619863..630381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS03245 (P5657_03245) yyzM 620937..621143 (+) 207 WP_003226838.1 DUF951 family protein -
  P5657_RS03250 (P5657_03250) yyaE 621194..623197 (+) 2004 WP_038828061.1 molybdopterin-dependent oxidoreductase -
  P5657_RS03255 (P5657_03255) ychF 623324..624424 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  P5657_RS03260 (P5657_03260) rpsF 624535..624822 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  P5657_RS03265 (P5657_03265) ssbA 624863..625381 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  P5657_RS03270 (P5657_03270) rpsR 625425..625664 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  P5657_RS03275 (P5657_03275) xth 625729..626487 (+) 759 WP_076457321.1 exodeoxyribonuclease III -
  P5657_RS03280 (P5657_03280) ccpB 626547..627482 (+) 936 WP_101502646.1 transcriptional regulator CcpB -
  P5657_RS03285 (P5657_03285) yyaH 627538..627918 (+) 381 WP_003244460.1 VOC family protein -
  P5657_RS03290 (P5657_03290) maa 627936..628490 (+) 555 WP_277710223.1 sugar O-acetyltransferase -
  P5657_RS03295 (P5657_03295) yyaJ 628524..629879 (-) 1356 WP_015250786.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=807025 P5657_RS03265 WP_003219228.1 624863..625381(+) (ssbA) [Bacillus subtilis strain DSM 13019]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=807025 P5657_RS03265 WP_003219228.1 624863..625381(+) (ssbA) [Bacillus subtilis strain DSM 13019]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378