Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RLT59_RS32915 Genome accession   NZ_CP134612
Coordinates   7219607..7220989 (+) Length   460 a.a.
NCBI ID   WP_311306770.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7214607..7225989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS32895 (RLT59_32895) - 7215669..7216469 (-) 801 WP_311306766.1 peptidylprolyl isomerase -
  RLT59_RS32900 (RLT59_32900) - 7216618..7217304 (+) 687 WP_311306767.1 MBL fold metallo-hydrolase -
  RLT59_RS32905 (RLT59_32905) hisS 7217318..7218580 (+) 1263 WP_311306768.1 histidine--tRNA ligase -
  RLT59_RS32910 (RLT59_32910) - 7218898..7219533 (+) 636 WP_311306769.1 vitamin K epoxide reductase family protein -
  RLT59_RS32915 (RLT59_32915) rarA 7219607..7220989 (+) 1383 WP_311306770.1 replication-associated recombination protein A Machinery gene
  RLT59_RS32920 (RLT59_32920) - 7221015..7221716 (-) 702 WP_311306771.1 DUF2470 domain-containing protein -
  RLT59_RS32925 (RLT59_32925) rpsD 7221905..7222519 (+) 615 WP_311306772.1 30S ribosomal protein S4 -
  RLT59_RS32930 (RLT59_32930) - 7222538..7224778 (-) 2241 WP_311306773.1 AAA family ATPase -
  RLT59_RS32935 (RLT59_32935) - 7225026..7225466 (+) 441 WP_073737538.1 DUF948 domain-containing protein -
  RLT59_RS32940 (RLT59_32940) - 7225474..7225827 (+) 354 WP_311306774.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48962.35 Da        Isoelectric Point: 6.1508

>NTDB_id=806912 RLT59_RS32915 WP_311306770.1 7219607..7220989(+) (rarA) [Streptomyces sp. ITFR-6]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRDLLHRALADERGLGGAVTLPEDAEEHLLRIAGGDARRALTALEAAAGAALSKGEPE
ITLLTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAREDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVRDKRYYQPTRYGAEARYADVADRVRERLGRTGGDGEADRSGT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=806912 RLT59_RS32915 WP_311306770.1 7219607..7220989(+) (rarA) [Streptomyces sp. ITFR-6]
GTGGAGCCCGACCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGTACCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAACCGGGCTCACCGCTGCGCCGCCTCGTCGGAG
AGGGGAGCGGGGGACCGGCCGGCCCCTCCTCCGTGATCCTCTGGGGCCCGCCCGGCATCGGCAAGACGACCCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAAGTACGGGCGGTCAT
CGAGGGCGCCCGGCGCGCCACAGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGG
CACAGCAGGACTCACTGCTCCCGGCCGTCGAGAACCGCTGGGTGACGCTGATCGCGGCCACCACCGAGAATCCCTACTTC
TCGATCATCTCGCCGCTGCTCTCGCGCTCCCTGCTGCTGACCCTGGAATCGCTGACCGACGACGACCTGCGCGATCTGCT
GCACCGCGCCCTGGCCGACGAGCGCGGACTCGGCGGCGCGGTGACGCTGCCGGAGGACGCGGAGGAGCACCTGCTGCGCA
TCGCGGGCGGTGACGCACGCCGGGCGCTGACGGCGCTGGAGGCGGCGGCCGGCGCGGCGCTGTCCAAGGGGGAGCCGGAG
ATCACCCTGCTGACCCTGGAGGAGACGGTCGACCGCGCCGCGGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTGATCAAGTCGATCCGAGGCTCTGACGTCGATGCCGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGTCTCGCGGACCCCACGGCGCTG
CCCACCGCGGTCGCCGCAGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACGAT
CGCCCTGGCCCTCGCCCCCAAGTCCAACGCGGCGACGCTGGCGATCTCAGCCGCCCGGGAGGACGTGCGCAAGGGCCTGG
CCGGCCCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGGGCCGCCAAGCTGGGGCACGCGCAGGGCTATGTCTAT
CCGCACGACGTCCCCGGCGGTATCGCCGCCCAGCAGTACGCACCGGACGCCGTGCGCGACAAGCGCTACTACCAGCCCAC
CCGGTACGGCGCGGAGGCGCGTTACGCGGACGTGGCGGACCGGGTCCGCGAGCGGCTCGGCCGTACCGGCGGCGACGGCG
AAGCGGACCGGTCCGGGACATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.688

93.261

0.426