Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RLT59_RS09760 Genome accession   NZ_CP134612
Coordinates   2201095..2202108 (-) Length   337 a.a.
NCBI ID   WP_311303028.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2196095..2207108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS09745 (RLT59_09745) - 2197125..2198366 (+) 1242 WP_311303026.1 PQQ-binding-like beta-propeller repeat protein -
  RLT59_RS09750 (RLT59_09750) - 2198443..2199396 (-) 954 Protein_1941 glycoside hydrolase family 16 protein -
  RLT59_RS09755 (RLT59_09755) - 2199645..2201063 (-) 1419 WP_311303027.1 GH1 family beta-glucosidase -
  RLT59_RS09760 (RLT59_09760) amiE 2201095..2202108 (-) 1014 WP_311303028.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS09765 (RLT59_09765) - 2202105..2203082 (-) 978 WP_311303029.1 ABC transporter permease -
  RLT59_RS09770 (RLT59_09770) - 2203086..2204066 (-) 981 WP_311303030.1 ABC transporter permease -
  RLT59_RS09775 (RLT59_09775) - 2204063..2205121 (-) 1059 WP_311303031.1 ABC transporter ATP-binding protein -
  RLT59_RS09780 (RLT59_09780) - 2205146..2206822 (-) 1677 WP_311303032.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36669.03 Da        Isoelectric Point: 6.7787

>NTDB_id=806863 RLT59_RS09760 WP_311303028.1 2201095..2202108(-) (amiE) [Streptomyces sp. ITFR-6]
MSEPVLSISGLNVDYGTGDDAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVRYHQRDGGTL
DLLTLSAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLQAHRPEMKRTERTARAQELLKLVGISADRLAAYPHQL
SGGMRQRVMIAMALALEPEVVIMDEPTTALDVVMQRQILRQLVKLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAASADIYRDPRHPYSDGLLHSFPALHGPRRELSGIPGSPPHLSAMPTGCAFHPRCAKKVEGCDTHVPVLAAPNGDSSRS
VACWLHREAPAPAVARS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=806863 RLT59_RS09760 WP_311303028.1 2201095..2202108(-) (amiE) [Streptomyces sp. ITFR-6]
ATGAGTGAGCCCGTCCTCAGCATCAGCGGCCTCAACGTCGACTACGGGACCGGGGACGACGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGGGGCGAGGTGCTCGGCCTCGCGGGCGAGTCCGGCTCCGGCAAGTCCACGCTGGCCTACG
CCGTCACCCGGCTGCTCTCCCCGCCCGGTGTGATCACCGGCGGCGAGGTCCGCTACCACCAGCGCGACGGCGGAACGCTC
GACCTGCTGACCCTGTCCGCGCCCGAACTGCGCGCCTTCCGCTGGCAGGAGCTGTCGATCGTCTTCCAGGGCGCGATGAA
CTCCCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTACTCCAGGCCCACCGCCCGGAGATGAAGCGCACCG
AGCGCACCGCACGCGCCCAGGAGCTCCTGAAGCTCGTCGGGATCTCCGCCGACCGGCTGGCCGCCTACCCGCACCAGCTC
TCCGGCGGAATGCGCCAGCGCGTCATGATCGCGATGGCGCTCGCGCTGGAACCCGAGGTCGTCATCATGGACGAGCCGAC
CACGGCCCTGGACGTCGTCATGCAGCGGCAGATCCTGCGCCAGCTGGTCAAGCTCCGCGAGGAGCTCGGCTTCTCCGTCG
TCTTCATCACGCACGACATCTCGCTCCTGATCGAGTTCTCCGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGCGTCCGCCGACATCTACCGCGACCCCCGCCACCCCTACAGCGACGGACTGCTGCACTCCTTCCCCGCGCTGCA
CGGCCCCCGGCGCGAACTCAGCGGCATCCCGGGCTCGCCCCCGCACCTGTCCGCGATGCCCACCGGCTGCGCCTTCCACC
CCCGCTGCGCCAAGAAGGTCGAGGGCTGCGACACGCACGTCCCGGTGCTCGCCGCACCGAACGGGGACAGCTCCCGCTCG
GTGGCCTGCTGGCTCCACCGGGAGGCCCCGGCCCCCGCAGTCGCCCGTTCCTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.462

100

0.386
  amiE Streptococcus thermophilus LMD-9

38.462

100

0.386
  amiE Streptococcus salivarius strain HSISS4

38.462

100

0.386