Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RLT58_RS30000 Genome accession   NZ_CP134609
Coordinates   6739777..6741171 (+) Length   464 a.a.
NCBI ID   WP_311313489.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6734777..6746171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS29980 (RLT58_29980) - 6735884..6736684 (-) 801 WP_311313485.1 peptidylprolyl isomerase -
  RLT58_RS29985 (RLT58_29985) - 6736831..6737517 (+) 687 WP_311313486.1 MBL fold metallo-hydrolase -
  RLT58_RS29990 (RLT58_29990) hisS 6737531..6738793 (+) 1263 WP_311313487.1 histidine--tRNA ligase -
  RLT58_RS29995 (RLT58_29995) - 6739070..6739705 (+) 636 WP_311313488.1 vitamin K epoxide reductase family protein -
  RLT58_RS30000 (RLT58_30000) rarA 6739777..6741171 (+) 1395 WP_311313489.1 replication-associated recombination protein A Machinery gene
  RLT58_RS30005 (RLT58_30005) - 6741185..6741889 (-) 705 WP_311313490.1 DUF2470 domain-containing protein -
  RLT58_RS30010 (RLT58_30010) rpsD 6742078..6742692 (+) 615 WP_136327444.1 30S ribosomal protein S4 -
  RLT58_RS30015 (RLT58_30015) - 6742711..6744951 (-) 2241 WP_311313491.1 AAA family ATPase -
  RLT58_RS30020 (RLT58_30020) - 6745163..6745603 (+) 441 WP_311314699.1 DUF948 domain-containing protein -
  RLT58_RS30025 (RLT58_30025) - 6745611..6745961 (+) 351 WP_311313492.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 49495.93 Da        Isoelectric Point: 6.1521

>NTDB_id=806843 RLT58_RS30000 WP_311313489.1 6739777..6741171(+) (rarA) [Streptomyces sp. ITFR-16]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRGLLRRALTDERGLGGAVSLPEDAEEHLLRIAGGDARRALTALEAAAGAALSKHEEE
ITLLTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVRDKRYYRPTRYGAEARYADVADRVRERLGRTGPEDAKGTTDTAETS

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=806843 RLT58_RS30000 WP_311313489.1 6739777..6741171(+) (rarA) [Streptomyces sp. ITFR-16]
GTGGAGCCCGACCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGTACCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCGGGCTCGCCGCTGCGCCGCCTCGTCGGCG
AGGGGAGCGGGGGACCGGCCGGCCCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCATCGGGAAGACGACTCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAAGTGCGGGCCGTGAT
CGAGGGCGCCCGCCGCGCCACCGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCGCTGCTGCCGGCCGTGGAGAACCGCTGGGTGACGCTCATCGCCGCGACCACCGAGAACCCCTACTTC
TCGATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTGACGCTGGAATCGCTCACCGACGACGACCTGCGCGGACTGCT
GCGCCGGGCGCTGACCGACGAGCGCGGCCTCGGCGGCGCGGTGAGCCTGCCCGAGGACGCCGAGGAGCATCTGCTGCGCA
TCGCCGGCGGTGACGCCCGCCGGGCGCTGACGGCGCTGGAGGCCGCGGCGGGCGCCGCGCTCTCCAAGCACGAGGAGGAG
ATCACCCTCCTGACGCTGGAGGAGACCGTCGACCGGGCGGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCGCTGATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCACTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTTGCGGACCCCACGGCGCTG
CCCACCGCGGTCGCGGCGGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCATGCCACGAT
CGCCCTGGCGCTGGCACCCAAGTCGAACGCGGCGACGCTGGCGATCTCCGCCGCCCAGGACGATGTGCGCAAGGGGCTGG
CCGGCCCGGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTGGGCCACGCCCAGGGCTACGTCTAC
CCGCACGATGTGCCCGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCGTCCGCGACAAGCGGTACTACCGGCCCAC
CCGCTACGGCGCGGAGGCGCGCTACGCGGACGTGGCGGACCGGGTCAGGGAGCGGCTCGGCCGGACGGGCCCCGAGGACG
CCAAGGGCACGACGGACACGGCGGAGACGTCCTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.688

92.457

0.422