Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5653_RS09455 Genome accession   NZ_CP120610
Coordinates   1828875..1829654 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823875..1834654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS09435 (P5653_09435) trmFO 1824572..1825876 (+) 1305 WP_025811382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5653_RS09440 (P5653_09440) xerC 1825943..1826857 (+) 915 WP_025811383.1 tyrosine recombinase XerC -
  P5653_RS09445 (P5653_09445) hslV 1826871..1827416 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  P5653_RS09450 (P5653_09450) hslU 1827424..1828836 (+) 1413 WP_257007241.1 HslU--HslV peptidase ATPase subunit -
  P5653_RS09455 (P5653_09455) codY 1828875..1829654 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5653_RS09460 (P5653_09460) flgB 1830006..1830395 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  P5653_RS09465 (P5653_09465) flgC 1830395..1830847 (+) 453 WP_025811385.1 flagellar basal body rod protein FlgC -
  P5653_RS09470 (P5653_09470) fliE 1830861..1831178 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  P5653_RS09475 (P5653_09475) fliF 1831229..1832830 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  P5653_RS09480 (P5653_09480) fliG 1832844..1833860 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  P5653_RS09485 (P5653_09485) fliH 1833844..1834611 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=806825 P5653_RS09455 WP_003181756.1 1828875..1829654(+) (codY) [Bacillus paralicheniformis strain DSM 28591]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=806825 P5653_RS09455 WP_003181756.1 1828875..1829654(+) (codY) [Bacillus paralicheniformis strain DSM 28591]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGCCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467