Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RLT58_RS10140 Genome accession   NZ_CP134609
Coordinates   2312033..2313043 (-) Length   336 a.a.
NCBI ID   WP_311310066.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2307033..2318043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS10130 (RLT58_10130) - 2308652..2310526 (-) 1875 WP_311310064.1 discoidin domain-containing protein -
  RLT58_RS10135 (RLT58_10135) - 2310582..2312000 (-) 1419 WP_311310065.1 GH1 family beta-glucosidase -
  RLT58_RS10140 (RLT58_10140) amiE 2312033..2313043 (-) 1011 WP_311310066.1 ABC transporter ATP-binding protein Regulator
  RLT58_RS10145 (RLT58_10145) - 2313040..2314050 (-) 1011 WP_311310067.1 ABC transporter permease -
  RLT58_RS10150 (RLT58_10150) - 2314054..2315034 (-) 981 WP_311310068.1 ABC transporter permease -
  RLT58_RS10155 (RLT58_10155) - 2315031..2316092 (-) 1062 WP_311310069.1 ABC transporter ATP-binding protein -
  RLT58_RS10160 (RLT58_10160) - 2316117..2317790 (-) 1674 WP_311310070.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36525.89 Da        Isoelectric Point: 6.7072

>NTDB_id=806799 RLT58_RS10140 WP_311310066.1 2312033..2313043(-) (amiE) [Streptomyces sp. ITFR-16]
MSEPVLTISGLNVDYGTGDDAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHQRDGQAL
DLLTLSAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLQAHRPEMRKPERTARAKELLGLVGISADRLGAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVKLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGAADIYRDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCAKKVEGCDTHVPVLARPDGDGNRS
VACWLHREAPAAAARA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=806799 RLT58_RS10140 WP_311310066.1 2312033..2313043(-) (amiE) [Streptomyces sp. ITFR-16]
ATGAGCGAGCCCGTCCTCACCATCAGCGGCCTCAACGTGGACTACGGGACCGGCGACGACGCCGTGCACGCCCTGCGCGA
CATCGACCTCACTCTGCACCGGGGCGAAGTCCTCGGCCTCGCGGGCGAGTCGGGCTCCGGCAAGTCCACCCTGGCGTACG
CGGTCACCCGGCTGCTCTCCCCGCCCGGCGTGATCACCGGCGGCGAGGTCCACTACCACCAGCGCGACGGCCAGGCCCTG
GACCTGCTGACCCTGTCGGCGCCGGAGCTGCGGGCCTTCCGCTGGCAGGAGCTGTCGATCGTCTTCCAGGGCGCGATGAA
CTCCCTCAACCCCGTGCACACGGTCCACAGTCAGCTCACCGACGTCCTCCAGGCCCACCGGCCGGAGATGCGCAAGCCCG
AGCGGACCGCCCGGGCCAAGGAGCTGCTCGGCCTGGTCGGCATCTCCGCCGACCGGCTCGGCGCCTACCCGCACCAGCTC
TCCGGCGGGATGCGCCAGCGCGTGATGATCGCCATGGCGCTCGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAGCTGGTCAAGCTCCGCGAGGAGCTGGGCTTCTCGGTCG
TCTTCATCACCCACGACATCTCGCTGCTGATCGAGTTCTCCGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGCGCGGCCGACATCTACCGGGACCCCCGCCACCCGTACAGCGACGGACTGCTGCACTCCTTCCCGGCGCTGCA
CGGCCCCCGCCGCGAGCTCACCGGCATCCCGGGCTCGCCCCCGCACCTGTCCGCGATGCCGGCCGGCTGCGCCTTCCACC
CCCGCTGCGCCAAGAAGGTCGAGGGCTGCGACACCCATGTCCCGGTGCTCGCCCGGCCCGACGGGGACGGCAACCGCTCG
GTGGCCTGCTGGCTCCACCGGGAAGCCCCGGCCGCCGCCGCCCGCGCCTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.485

98.214

0.378
  amiE Streptococcus thermophilus LMD-9

38.485

98.214

0.378
  amiE Streptococcus salivarius strain HSISS4

38.485

98.214

0.378