Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RLT57_RS08755 Genome accession   NZ_CP134605
Coordinates   1966222..1968447 (-) Length   741 a.a.
NCBI ID   WP_311296803.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961222..1973447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS08735 (RLT57_08735) - 1961889..1962524 (+) 636 WP_311296799.1 TetR/AcrR family transcriptional regulator -
  RLT57_RS08740 (RLT57_08740) - 1962613..1963470 (-) 858 WP_311296800.1 VTT domain-containing protein -
  RLT57_RS08745 (RLT57_08745) - 1963621..1964370 (-) 750 WP_311296801.1 SDR family oxidoreductase -
  RLT57_RS08750 (RLT57_08750) - 1964808..1966097 (-) 1290 WP_311296802.1 citrate synthase -
  RLT57_RS08755 (RLT57_08755) recD/recD2/recDB 1966222..1968447 (-) 2226 WP_311296803.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RLT57_RS08760 (RLT57_08760) - 1968772..1969632 (-) 861 WP_311296805.1 sugar phosphate isomerase/epimerase family protein -
  RLT57_RS08765 (RLT57_08765) - 1969629..1970780 (-) 1152 WP_311296806.1 dihydrodipicolinate synthase family protein -
  RLT57_RS08770 (RLT57_08770) - 1970777..1971928 (-) 1152 WP_311296807.1 Gfo/Idh/MocA family oxidoreductase -
  RLT57_RS08775 (RLT57_08775) - 1972227..1973315 (+) 1089 WP_311296808.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79878.31 Da        Isoelectric Point: 6.8747

>NTDB_id=806749 RLT57_RS08755 WP_311296803.1 1966222..1968447(-) (recD/recD2/recDB) [Streptomyces sp. ITFR-21]
MAETTTHLSVLEGVLERITYANEDNGYTVARVDTGRGSADLLTVVGALLGAQPGESLRMHGRWGSHPQYGKQFTVENYTT
VLPATIQGIRRYLGSGLIKGIGPRIAERIVEHFGTGTLEVIESEPKRLIEVPGLGPKRTKLIATAWEEQKAIKEVMVFLQ
GVGVSTSIAVRIYKSYGDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQATDQGNCFLP
QERLIADSVKLLQVDIGLVIDCLGELADAEGVVREDVPAADGDQEPVKAVYLVPFHRAEISLAAQLLRLLRGPEDRLPAF
HDVDWDKALAWLAATTGTDLAPEQQQAVRLALTQKVAVLTGGPGCGKSFTVRSVVALALAKKAKVVLAAPTGRAAKRLAE
LTGAQASTVHRLLELKPGGDAAYDRDRPLEADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPSVGAGEVLRD
LLAPASPVPSVQLTRIFRQAQQSGVVTNAHRINAGEQPVTKGLPDFFLFPEEDSEEAGRLTVDVVARRIPAKFGLDPRRD
VQVLAPMHRGPAGAGVLNGLLQQAVTPARPDLPERRFGGRTFRVGDKVTQIRNNYDKGANGVFNGTVGVVTALDTDEQKL
TVRTDEDEEIDYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQAV
RTVSAGRRFTALDHRLSRGST

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=806749 RLT57_RS08755 WP_311296803.1 1966222..1968447(-) (recD/recD2/recDB) [Streptomyces sp. ITFR-21]
ATGGCGGAGACGACGACGCACCTTTCCGTTCTGGAAGGCGTCCTGGAGCGCATCACCTACGCCAACGAGGACAACGGTTA
CACAGTCGCGCGGGTGGACACCGGTCGCGGCTCCGCGGACCTGCTCACCGTGGTCGGCGCGCTGCTCGGCGCCCAGCCTG
GCGAATCCCTGCGGATGCACGGCCGTTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACG
GTCCTGCCGGCCACGATCCAGGGCATCCGCCGCTACCTGGGATCGGGGCTGATCAAGGGCATCGGGCCGAGGATCGCCGA
GCGCATCGTCGAACACTTCGGCACCGGCACCCTGGAGGTCATCGAGTCAGAGCCCAAGCGCCTCATCGAGGTGCCCGGGC
TCGGTCCCAAGCGCACCAAGCTGATCGCCACCGCGTGGGAGGAACAGAAAGCTATCAAGGAGGTGATGGTCTTCCTGCAG
GGCGTGGGCGTCTCCACATCCATCGCCGTGCGGATCTACAAGTCCTACGGGGACGCCTCCATCTCGGTGGTGAAGAACCA
GCCCTACCGGCTGGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACCGGATCGCGCAGGCGGTCGGGATACCGC
ACGACAGTCCGGAGCGGGTCAAGGCCGGCCTCCAGTACGCCCTTTCCCAGGCCACCGACCAGGGCAACTGCTTCCTGCCG
CAGGAACGGCTCATCGCCGACTCGGTGAAGCTGCTCCAAGTGGACATCGGCCTGGTGATCGACTGCCTCGGCGAACTGGC
GGACGCTGAAGGGGTGGTCCGTGAGGACGTACCGGCCGCCGACGGCGACCAGGAGCCGGTCAAAGCGGTCTACCTGGTGC
CCTTCCACCGCGCCGAGATATCGCTCGCCGCCCAGCTGCTCCGGCTGCTGCGCGGGCCGGAGGACCGGCTGCCGGCGTTC
CACGACGTGGACTGGGACAAGGCACTGGCCTGGCTCGCCGCGACAACCGGCACCGACCTCGCTCCGGAACAGCAGCAGGC
GGTACGGCTGGCCCTGACACAGAAGGTCGCGGTTCTCACCGGTGGCCCCGGTTGTGGCAAGTCCTTCACCGTACGTTCGG
TGGTGGCCCTCGCTCTGGCCAAGAAGGCCAAGGTGGTCCTGGCCGCGCCCACCGGCCGTGCCGCCAAGCGACTGGCGGAG
CTGACCGGCGCGCAGGCGTCCACCGTGCATCGTCTGCTGGAGCTTAAGCCGGGCGGTGACGCCGCGTACGACCGGGACCG
GCCGCTGGAGGCCGACCTGGTGGTGGTCGACGAGGCGTCGATGCTGGACCTGCTGCTGGCGAACAAACTGGCGAAGGCCG
TGCCCCCCGGCGCCCACCTGCTGTTCGTCGGGGACGTGGACCAGCTGCCGAGCGTCGGCGCGGGCGAGGTGCTGCGGGAT
CTTCTGGCGCCCGCCAGCCCTGTGCCCTCGGTGCAGCTGACCCGGATCTTCCGCCAGGCGCAGCAGTCCGGCGTGGTGAC
CAACGCGCACCGGATCAACGCGGGCGAGCAGCCGGTCACCAAGGGCCTGCCCGACTTCTTCCTCTTCCCCGAGGAGGACT
CCGAGGAGGCCGGACGGCTCACCGTGGACGTGGTGGCCCGACGGATCCCGGCCAAGTTCGGCCTCGACCCGCGCCGGGAC
GTGCAGGTGCTCGCCCCGATGCACCGTGGCCCGGCCGGGGCCGGCGTTCTGAACGGACTGCTCCAGCAAGCCGTCACCCC
GGCCCGCCCGGACCTGCCGGAGCGGAGGTTCGGCGGCCGTACCTTCCGGGTGGGTGACAAGGTGACGCAGATCAGAAACA
ACTATGACAAAGGCGCCAACGGTGTCTTCAACGGCACGGTCGGGGTGGTCACCGCTTTGGACACGGACGAGCAGAAGCTG
ACCGTGCGCACCGACGAGGACGAGGAGATCGATTACGACTTTGACGAGCTGGACGAGCTGGCCCACGCGTACGCGGTCAC
CATCCACCGCTCGCAGGGCAGTGAGTATCCGGCCGTAGTTATCCCCGTCACCACCGGTGCCTGGATGATGCTCCAGCGGA
ATCTGCTCTACACGGCCGTGACCAGGGCGAAGAAGCTGGTGGTGCTGGTCGGGTCGCGGCGTGCGATCGGCCAGGCGGTG
CGCACCGTGTCGGCCGGACGTCGCTTCACGGCACTCGACCATCGCCTGTCCCGGGGCTCAACCTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-643)

AAA domain (AAA_30)

(340-518)

Helix-hairpin-helix domain (HHH_5)

(98-146)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.072

100

0.363