Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RLT57_RS03270 Genome accession   NZ_CP134605
Coordinates   747241..748596 (-) Length   451 a.a.
NCBI ID   WP_311295855.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 742241..753596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS03245 (RLT57_03245) - 742446..742856 (-) 411 WP_311295850.1 DUF6167 family protein -
  RLT57_RS03250 (RLT57_03250) - 742870..743307 (-) 438 WP_311295851.1 DUF948 domain-containing protein -
  RLT57_RS03255 (RLT57_03255) - 743557..745635 (+) 2079 WP_311295852.1 AAA family ATPase -
  RLT57_RS03260 (RLT57_03260) rpsD 745725..746339 (-) 615 WP_311295853.1 30S ribosomal protein S4 -
  RLT57_RS03265 (RLT57_03265) - 746515..747204 (+) 690 WP_311295854.1 DUF2470 domain-containing protein -
  RLT57_RS03270 (RLT57_03270) rarA 747241..748596 (-) 1356 WP_311295855.1 replication-associated recombination protein A Machinery gene
  RLT57_RS03275 (RLT57_03275) - 748607..749296 (-) 690 WP_311295856.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RLT57_RS03280 (RLT57_03280) - 749431..750795 (+) 1365 WP_311295857.1 glutamine synthetase family protein -
  RLT57_RS03285 (RLT57_03285) - 750837..751481 (-) 645 WP_311295858.1 vitamin K epoxide reductase family protein -
  RLT57_RS03290 (RLT57_03290) hisS 751591..752853 (-) 1263 WP_311295859.1 histidine--tRNA ligase -
  RLT57_RS03295 (RLT57_03295) - 752865..753575 (-) 711 WP_311295860.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48119.51 Da        Isoelectric Point: 6.1986

>NTDB_id=806735 RLT57_RS03270 WP_311295855.1 747241..748596(-) (rarA) [Streptomyces sp. ITFR-21]
MEPDLFTAAVEDRQERDPGSSPLAVRMRPRTIDEVVGQKHLLRPGSPLRRLVGEGGGGPAGSSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRTVIESAKRQSGGYQRETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRDVLRRALTEERGLAGAVALPEDTESHLLRIAAGDARRALTALEAGAGAAIAKGEDT
VTLATMEESVDRAAVAYDRDGDQHYDVASALIKSIRGSDADAALHYLARMIDAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEASLILSHATIALALAPKSNAATTAIGAALADVRAGKAGPVPAHLRDGHYKGAARLGHAQGYVY
PHDVPGAIAAQDYLPAELLGRRYYEPTRYGAEARYFDVLERVRERLAGRGD

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=806735 RLT57_RS03270 WP_311295855.1 747241..748596(-) (rarA) [Streptomyces sp. ITFR-21]
GTGGAGCCAGATCTGTTCACCGCGGCCGTGGAAGACCGGCAGGAGCGGGACCCCGGCAGCAGCCCGCTCGCCGTGCGGAT
GCGACCGCGCACCATCGACGAGGTGGTGGGCCAAAAGCACCTGCTGCGGCCGGGCTCGCCGCTGCGCCGCCTGGTGGGCG
AGGGCGGCGGCGGCCCCGCCGGGTCCTCCTCGGTGATCCTGTGGGGTCCGCCCGGCACCGGCAAGACCACGCTCGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGGTTCGTCGAGCTGTCCGCGATCACCGCCGGGGTCAAGGAGGTCCGTACGGTCAT
CGAGAGCGCCAAACGCCAGTCCGGCGGGTACCAGCGGGAGACCGTGCTGTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCGGTGGAGAACCGCTGGGTGACGCTGATCGCGGCCACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTGTCGCGCTCCCTGCTGCTGACCCTGGAACCGCTCACCGACGACGACCTGCGGGACGTCCT
GCGCCGGGCGCTGACCGAGGAGCGGGGCCTGGCCGGGGCGGTGGCGCTGCCCGAGGACACCGAGTCGCACCTGCTGCGGA
TCGCCGCCGGCGACGCCCGGCGCGCGCTGACCGCGCTGGAGGCCGGCGCGGGGGCGGCGATCGCCAAGGGCGAGGACACC
GTCACCCTGGCCACCATGGAGGAGTCCGTCGACCGGGCCGCGGTGGCGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCCAGCGCGCTGATCAAGTCCATCCGGGGCTCCGACGCGGACGCGGCGCTGCACTACCTGGCCCGGATGATCGACGCGG
GCGAGGACCCCCGCTTCATCGCCCGCCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTGGCCGACCCCACCGCGCTG
CCGACCGCGGTGGCCGCCGCCCAGGCGGTCGCCATGATCGGCTTTCCCGAGGCGTCGCTGATCCTCAGCCACGCCACGAT
CGCGCTGGCGCTCGCCCCCAAGTCCAACGCCGCCACCACCGCGATCGGCGCGGCGCTGGCGGACGTACGGGCCGGGAAGG
CCGGGCCGGTGCCGGCGCACCTGCGCGACGGCCACTACAAGGGCGCGGCCAGGCTCGGCCACGCCCAGGGCTACGTGTAC
CCGCACGACGTACCCGGTGCGATCGCGGCGCAGGACTACCTCCCGGCGGAGCTGCTCGGCCGCCGCTACTACGAGCCGAC
CCGGTACGGGGCCGAGGCCCGGTACTTCGACGTGCTGGAGCGGGTCAGGGAGCGGCTGGCCGGCCGCGGGGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.573

96.009

0.428