Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OO850_RS20740 Genome accession   NZ_AP026116
Coordinates   4103636..4104103 (+) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain CEC13002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4098636..4109103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO850_RS20695 (CEC13002_39850) rplP 4098746..4099156 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  OO850_RS20700 (CEC13002_39860) rpsC 4099169..4099870 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  OO850_RS20705 (CEC13002_39870) rplV 4099888..4100220 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  OO850_RS20710 (CEC13002_39880) rpsS 4100235..4100513 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  OO850_RS20715 (CEC13002_39890) rplB 4100530..4101351 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  OO850_RS20720 (CEC13002_39900) rplW 4101369..4101671 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  OO850_RS20725 (CEC13002_39910) rplD 4101668..4102273 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  OO850_RS20730 (CEC13002_39920) rplC 4102284..4102913 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  OO850_RS20735 (CEC13002_39930) rpsJ 4102946..4103257 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  OO850_RS20740 (CEC13002_39940) pilD 4103636..4104103 (+) 468 WP_000381746.1 A24 family peptidase Machinery gene
  OO850_RS20745 (CEC13002_39950) bfr 4104100..4104576 (-) 477 WP_000675516.1 bacterioferritin -
  OO850_RS20750 (CEC13002_39960) bfd 4104649..4104843 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  OO850_RS20755 (CEC13002_39970) tuf 4105026..4106210 (-) 1185 WP_000031783.1 elongation factor Tu -
  OO850_RS20760 (CEC13002_39980) fusA 4106281..4108395 (-) 2115 WP_000124700.1 elongation factor G -
  OO850_RS20765 (CEC13002_39990) rpsG 4108492..4108962 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=80661 OO850_RS20740 WP_000381746.1 4103636..4104103(+) (pilD) [Escherichia coli strain CEC13002]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=80661 OO850_RS20740 WP_000381746.1 4103636..4104103(+) (pilD) [Escherichia coli strain CEC13002]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387