Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5638_RS14155 Genome accession   NZ_CP120599
Coordinates   2773524..2774303 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain PRO114     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768524..2779303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS14125 (P5638_14125) fliH 2768638..2769402 (-) 765 WP_208945818.1 flagellar assembly protein FliH -
  P5638_RS14130 (P5638_14130) fliG 2769395..2770411 (-) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  P5638_RS14135 (P5638_14135) fliF 2770423..2772015 (-) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  P5638_RS14140 (P5638_14140) fliE 2772065..2772382 (-) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  P5638_RS14145 (P5638_14145) flgC 2772394..2772846 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  P5638_RS14150 (P5638_14150) flgB 2772846..2773235 (-) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  P5638_RS14155 (P5638_14155) codY 2773524..2774303 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5638_RS14160 (P5638_14160) hslU 2774338..2775738 (-) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  P5638_RS14165 (P5638_14165) hslV 2775755..2776300 (-) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  P5638_RS14170 (P5638_14170) xerC 2776315..2777232 (-) 918 WP_024424182.1 tyrosine recombinase XerC -
  P5638_RS14175 (P5638_14175) trmFO 2777295..2778599 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=806518 P5638_RS14155 WP_007499612.1 2773524..2774303(-) (codY) [Bacillus safensis strain PRO114]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=806518 P5638_RS14155 WP_007499612.1 2773524..2774303(-) (codY) [Bacillus safensis strain PRO114]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471