Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5622_RS16095 Genome accession   NZ_CP120598
Coordinates   3089851..3090630 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PRO115     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084851..3095630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS16065 (P5622_16065) fliH 3084869..3085621 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  P5622_RS16070 (P5622_16070) fliG 3085614..3086630 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  P5622_RS16075 (P5622_16075) fliF 3086643..3088253 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  P5622_RS16080 (P5622_16080) fliE 3088299..3088619 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  P5622_RS16085 (P5622_16085) flgC 3088630..3089082 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  P5622_RS16090 (P5622_16090) flgB 3089082..3089471 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  P5622_RS16095 (P5622_16095) codY 3089851..3090630 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5622_RS16100 (P5622_16100) hslU 3090670..3092082 (-) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  P5622_RS16105 (P5622_16105) clpQ 3092090..3092635 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  P5622_RS16110 (P5622_16110) xerC 3092648..3093562 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  P5622_RS16115 (P5622_16115) trmFO 3093630..3094937 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=806455 P5622_RS16095 WP_003220850.1 3089851..3090630(-) (codY) [Bacillus subtilis strain PRO115]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=806455 P5622_RS16095 WP_003220850.1 3089851..3090630(-) (codY) [Bacillus subtilis strain PRO115]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467