Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   P5663_RS06125 Genome accession   NZ_CP120590
Coordinates   1182644..1184986 (+) Length   780 a.a.
NCBI ID   WP_025911737.1    Uniprot ID   A0A8I1MD65
Organism   Priestia flexa strain PRO116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1177644..1189986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS06110 (P5663_06110) - 1178901..1179194 (+) 294 WP_025911741.1 post-transcriptional regulator -
  P5663_RS06115 (P5663_06115) secDF 1179308..1181542 (+) 2235 WP_078989244.1 protein translocase subunit SecDF -
  P5663_RS06120 (P5663_06120) - 1181679..1182572 (+) 894 WP_078989245.1 cation diffusion facilitator family transporter -
  P5663_RS06125 (P5663_06125) recJ 1182644..1184986 (+) 2343 WP_025911737.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  P5663_RS06130 (P5663_06130) - 1185002..1185514 (+) 513 WP_025911735.1 adenine phosphoribosyltransferase -
  P5663_RS06135 (P5663_06135) - 1185708..1187906 (+) 2199 WP_277717312.1 RelA/SpoT family protein -
  P5663_RS06140 (P5663_06140) dtd 1187923..1188368 (+) 446 Protein_1126 D-aminoacyl-tRNA deacylase -
  P5663_RS06145 (P5663_06145) - 1188416..1189369 (-) 954 WP_277717313.1 N-acetylmuramoyl-L-alanine amidase -
  P5663_RS06150 (P5663_06150) - 1189451..1189627 (+) 177 WP_035321387.1 hypothetical protein -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 87367.96 Da        Isoelectric Point: 4.7392

>NTDB_id=806370 P5663_RS06125 WP_025911737.1 1182644..1184986(+) (recJ) [Priestia flexa strain PRO116]
MLQSKKRWNVKHIDDPLVDEFAKKLNITPLVASLLINRGIQTVEEASQFLHIEDESFHDPFLLEGMEETVARIRQAIENN
ERIMIYGDYDADGVSSTSVMLSVLGQLGAQVDFYIPNRFTEGYGPNEQAFRQIGDEGYGLVITVDTGISAVKEAKLAAEI
GFDLIITDHHEPGPEIPEAYAIIHPKLPGGGYPFKELAGVGVAFKLAHALLGEAPEHLLELAVIGTIADLVPLVGENRLI
AKKGLRYLKSSTRPGVEALLKVCSVKKEDITEDTIGFALAPRINAVGRLQDANPAVDLLMSAHYEEAIELAKEIDALNKE
RQQIVNEITQEAIDTVESLYPPSENAVLIIEGEGWNAGVVGIVASRLVEKFYRPTIVLSLDHETGLAKGSARSIAGFDLF
ANLSKSRDILPHFGGHPMAAGMTLEAKNVELLRQRLNEQAREVLTEQDFIPITSIDTICKVEDITIAGIEELQTLAPFGM
HNPKPKVLVERVTPTSMRKIGSDKNHLKLVVEDNGLSIDVVGFGLGHVLDEVSPLAKVSLVGELSINEWNNIRKPQLMIE
DVAVSEWQLFDYRNSFDMKRFFQEIFTKEMDIVTFNQQTVQKHAAILPMDQVVEISTDEQASLYNSADKQMILLDLPDSK
ERLNLLFAEGKPARIYAMFVTENDSYFDTIPTREHFKWFYGLLAKRSPFDLKHYKEEIAIHKGWTKDTIDFICQVFFELE
FVTINNGLISLVKNSPKRDLIESVTYRKKQQQIEMEKNFIYSSYAQLKSEFEKLLASADE

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=806370 P5663_RS06125 WP_025911737.1 1182644..1184986(+) (recJ) [Priestia flexa strain PRO116]
ATGCTACAGTCAAAGAAGCGTTGGAATGTAAAACATATAGATGATCCACTTGTTGATGAATTTGCAAAGAAACTCAATAT
TACACCTCTCGTTGCTTCACTGCTTATTAATCGAGGAATTCAAACAGTAGAAGAAGCCTCACAGTTTTTACATATTGAGG
ATGAATCTTTTCATGACCCATTTCTTTTAGAAGGTATGGAAGAAACGGTTGCGCGCATTCGTCAAGCGATTGAAAACAAT
GAACGTATTATGATATATGGGGATTATGATGCTGACGGTGTAAGCAGTACGTCCGTTATGCTTTCTGTTTTAGGTCAACT
CGGAGCGCAAGTTGATTTTTATATACCCAATCGTTTTACAGAAGGCTACGGCCCAAACGAACAGGCATTTAGACAGATTG
GTGATGAAGGATATGGATTAGTTATTACAGTAGATACTGGAATTTCCGCTGTTAAAGAGGCAAAGCTAGCAGCTGAGATA
GGGTTTGATTTAATCATTACAGACCACCATGAACCAGGTCCAGAAATTCCGGAAGCCTATGCGATTATCCATCCTAAACT
TCCAGGTGGAGGCTATCCATTCAAAGAGCTAGCTGGAGTTGGAGTAGCGTTTAAATTAGCTCACGCTTTGCTCGGTGAAG
CTCCTGAACATTTATTGGAGCTAGCTGTCATTGGTACAATTGCTGATTTGGTGCCGCTAGTAGGAGAAAATCGACTAATA
GCGAAAAAGGGCTTACGCTATTTAAAAAGTTCAACTCGACCTGGAGTTGAAGCGCTATTAAAAGTGTGCAGTGTGAAGAA
AGAAGACATTACGGAAGACACAATTGGTTTTGCCCTTGCTCCAAGAATTAATGCTGTAGGTCGTCTTCAAGATGCGAACC
CGGCAGTCGATTTACTTATGTCTGCTCATTATGAAGAAGCAATCGAGTTAGCAAAAGAAATTGATGCTTTAAATAAAGAG
CGCCAACAGATTGTAAATGAAATTACGCAAGAAGCAATCGATACTGTAGAAAGCCTATATCCGCCAAGTGAAAATGCAGT
CTTAATTATTGAAGGTGAAGGGTGGAACGCAGGAGTTGTTGGAATCGTAGCTTCTCGGTTGGTTGAAAAGTTCTATCGTC
CAACTATTGTGTTAAGTCTGGATCACGAAACCGGCTTAGCAAAAGGGTCGGCAAGAAGCATTGCTGGATTTGATTTATTT
GCAAACTTATCAAAGAGTCGTGATATTTTACCGCATTTCGGGGGCCACCCGATGGCTGCAGGGATGACGCTTGAAGCGAA
GAATGTTGAGCTACTGCGCCAGCGTTTAAATGAACAAGCGCGAGAAGTGCTAACTGAACAAGACTTCATTCCGATTACCT
CGATTGATACGATATGCAAAGTTGAGGATATTACAATCGCTGGTATTGAAGAGCTCCAAACACTCGCTCCTTTTGGCATG
CATAACCCCAAGCCGAAGGTGCTTGTTGAGCGTGTTACGCCAACATCAATGCGTAAAATCGGCAGTGATAAAAACCATTT
AAAGCTTGTTGTAGAAGATAATGGGCTATCAATTGACGTCGTAGGGTTTGGTTTAGGACATGTATTAGATGAAGTCTCTC
CGTTAGCCAAAGTATCGTTAGTCGGTGAGCTTTCAATTAACGAATGGAATAATATACGCAAGCCACAGCTCATGATTGAA
GATGTAGCAGTGAGTGAATGGCAGCTTTTTGATTATCGTAATTCATTTGATATGAAGAGATTCTTTCAAGAAATTTTCAC
GAAAGAAATGGATATCGTGACGTTTAATCAACAAACCGTTCAAAAGCATGCAGCGATTTTGCCGATGGATCAAGTCGTTG
AGATTTCGACAGATGAACAAGCTAGTCTATATAATTCAGCTGATAAACAAATGATTCTTTTAGATTTACCAGATTCAAAA
GAGAGGTTAAATCTCTTATTTGCTGAAGGAAAGCCGGCTCGAATTTATGCGATGTTCGTAACAGAAAATGATAGTTATTT
TGATACGATTCCGACTCGTGAACATTTTAAGTGGTTTTATGGACTGCTGGCTAAAAGAAGCCCGTTTGATTTAAAACACT
ATAAAGAAGAGATTGCCATTCATAAAGGCTGGACAAAAGATACAATTGATTTTATCTGCCAGGTGTTTTTCGAACTAGAA
TTTGTTACAATAAACAATGGTCTAATTTCGCTAGTGAAAAATAGTCCTAAACGTGATTTAATAGAGTCTGTGACTTATCG
CAAGAAACAGCAACAAATTGAAATGGAAAAAAACTTTATTTATAGTTCATATGCACAGTTAAAAAGTGAGTTTGAGAAGC
TTCTTGCAAGTGCGGATGAATGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.718

100

0.537