Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ53_RS00325 Genome accession   NZ_CP134591
Coordinates   60664..61929 (+) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55664..66929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ53_RS00295 (RKQ53_00300) mutY 55833..56867 (-) 1035 WP_030424073.1 A/G-specific adenine glycosylase -
  RKQ53_RS00300 (RKQ53_00305) - 57008..57370 (-) 363 WP_000130110.1 HIT family protein -
  RKQ53_RS00305 (RKQ53_00310) - 57556..58293 (-) 738 WP_030424072.1 dienelactone hydrolase family protein -
  RKQ53_RS00310 (RKQ53_00315) - 58465..58623 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ53_RS00315 (RKQ53_00320) - 58818..59276 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ53_RS00320 (RKQ53_00325) - 59386..60558 (+) 1173 WP_030424071.1 PQQ-dependent sugar dehydrogenase -
  RKQ53_RS00325 (RKQ53_00330) rarA 60664..61929 (+) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  RKQ53_RS00330 (RKQ53_00335) - 61945..62784 (-) 840 WP_030424068.1 formate/nitrite transporter family protein -
  RKQ53_RS00335 (RKQ53_00340) - 63069..63272 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ53_RS00340 (RKQ53_00345) purC 63461..64180 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ53_RS00345 (RKQ53_00350) - 64218..64820 (-) 603 WP_101182788.1 lipoprotein-34 precursor (NlpB) -
  RKQ53_RS00350 (RKQ53_00355) dapA 64836..65729 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ53_RS00355 (RKQ53_00360) pncA 66059..66703 (+) 645 WP_015451655.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=806212 RKQ53_RS00325 WP_001285406.1 60664..61929(+) (rarA) [Acinetobacter baumannii strain XH1023]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=806212 RKQ53_RS00325 WP_001285406.1 60664..61929(+) (rarA) [Acinetobacter baumannii strain XH1023]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375