Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   RKQ55_RS05735 Genome accession   NZ_CP134586
Coordinates   1234356..1236113 (+) Length   585 a.a.
NCBI ID   WP_005128264.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229356..1241113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS05715 (RKQ55_05745) - 1230255..1231124 (+) 870 WP_005128260.1 PhzF family phenazine biosynthesis protein -
  RKQ55_RS05720 (RKQ55_05750) - 1231178..1231957 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  RKQ55_RS05725 (RKQ55_05755) tsaA 1232062..1232790 (+) 729 WP_005128261.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  RKQ55_RS05730 (RKQ55_05760) - 1232800..1234068 (-) 1269 WP_005128262.1 DUF4010 domain-containing protein -
  RKQ55_RS05735 (RKQ55_05765) pilB 1234356..1236113 (+) 1758 WP_005128264.1 GspE/PulE family protein Machinery gene
  RKQ55_RS05740 (RKQ55_05770) - 1236195..1236554 (+) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  RKQ55_RS05745 (RKQ55_05775) - 1236662..1237324 (+) 663 WP_001221456.1 response regulator transcription factor -
  RKQ55_RS05750 (RKQ55_05780) - 1237321..1238679 (+) 1359 WP_005128266.1 cell wall metabolism sensor histidine kinase WalK -
  RKQ55_RS05755 (RKQ55_05785) hemP 1238745..1238915 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  RKQ55_RS05760 (RKQ55_05790) - 1239052..1239951 (+) 900 WP_002045805.1 NUDIX domain-containing protein -
  RKQ55_RS05765 (RKQ55_05795) - 1239973..1240524 (-) 552 WP_000913439.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66829.60 Da        Isoelectric Point: 7.0339

>NTDB_id=806088 RKQ55_RS05735 WP_005128264.1 1234356..1236113(+) (pilB) [Acinetobacter baumannii strain XH1026]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPVEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEEEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=806088 RKQ55_RS05735 WP_005128264.1 1234356..1236113(+) (pilB) [Acinetobacter baumannii strain XH1026]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGACAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATCTAA
AAGACCAGCACCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCGGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTAAGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGTGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACCCTGACTGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGG
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTGCGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACGGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAGGAGGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.331

100

0.378