Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ55_RS00275 Genome accession   NZ_CP134586
Coordinates   60780..62045 (+) Length   421 a.a.
NCBI ID   WP_001285411.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55780..67045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS00245 (RKQ55_00250) mutY 55948..56982 (-) 1035 WP_001113875.1 A/G-specific adenine glycosylase -
  RKQ55_RS00250 (RKQ55_00255) - 57123..57485 (-) 363 WP_000130110.1 HIT family protein -
  RKQ55_RS00255 (RKQ55_00260) - 57671..58408 (-) 738 WP_270900878.1 dienelactone hydrolase family protein -
  RKQ55_RS00260 (RKQ55_00265) - 58581..58739 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ55_RS00265 (RKQ55_00270) - 58934..59392 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ55_RS00270 (RKQ55_00275) - 59505..60674 (+) 1170 WP_012392008.1 PQQ-dependent sugar dehydrogenase -
  RKQ55_RS00275 (RKQ55_00280) rarA 60780..62045 (+) 1266 WP_001285411.1 replication-associated recombination protein A Machinery gene
  RKQ55_RS00280 (RKQ55_00285) - 62060..62899 (-) 840 WP_031965447.1 formate/nitrite transporter family protein -
  RKQ55_RS00285 (RKQ55_00290) - 63185..63388 (-) 204 WP_032067966.1 hypothetical protein -
  RKQ55_RS00290 (RKQ55_00295) purC 63581..64300 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ55_RS00295 (RKQ55_00300) - 64338..64940 (-) 603 WP_001177091.1 hypothetical protein -
  RKQ55_RS00300 (RKQ55_00305) dapA 64956..65849 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ55_RS00305 (RKQ55_00310) pncA 66179..66823 (+) 645 WP_270900879.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46960.62 Da        Isoelectric Point: 5.8354

>NTDB_id=806058 RKQ55_RS00275 WP_001285411.1 60780..62045(+) (rarA) [Acinetobacter baumannii strain XH1026]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=806058 RKQ55_RS00275 WP_001285411.1 60780..62045(+) (rarA) [Acinetobacter baumannii strain XH1026]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAT
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTCTAGGTCAAACAGCA
GTTTACTTAGCAACGAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTATTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41

95.012

0.39