Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ56_RS00270 Genome accession   NZ_CP134583
Coordinates   59391..60656 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain XH1032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54391..65656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS00240 (RKQ56_00245) mutY 54560..55594 (-) 1035 WP_032030116.1 A/G-specific adenine glycosylase -
  RKQ56_RS00245 (RKQ56_00250) - 55735..56097 (-) 363 WP_032030117.1 HIT family protein -
  RKQ56_RS00250 (RKQ56_00255) - 56283..57020 (-) 738 WP_000100767.1 dienelactone hydrolase family protein -
  RKQ56_RS00255 (RKQ56_00260) - 57192..57350 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ56_RS00260 (RKQ56_00265) - 57545..58003 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ56_RS00265 (RKQ56_00270) - 58116..59285 (+) 1170 WP_079282185.1 PQQ-dependent sugar dehydrogenase -
  RKQ56_RS00270 (RKQ56_00275) rarA 59391..60656 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  RKQ56_RS00275 (RKQ56_00280) - 60671..61510 (-) 840 WP_000349492.1 formate/nitrite transporter family protein -
  RKQ56_RS00280 (RKQ56_00285) - 61797..62000 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ56_RS00285 (RKQ56_00290) purC 62193..62912 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ56_RS00290 (RKQ56_00295) - 62950..63552 (-) 603 WP_001177091.1 hypothetical protein -
  RKQ56_RS00295 (RKQ56_00300) dapA 63568..64461 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ56_RS00300 (RKQ56_00305) pncA 64791..65435 (+) 645 WP_032030121.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=805983 RKQ56_RS00270 WP_001285409.1 59391..60656(+) (rarA) [Acinetobacter baumannii strain XH1032]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805983 RKQ56_RS00270 WP_001285409.1 59391..60656(+) (rarA) [Acinetobacter baumannii strain XH1032]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGAGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCACCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCTGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTACAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387