Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P3L57_RS08680 Genome accession   NZ_CP120511
Coordinates   1718622..1719401 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. B28     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713622..1724401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L57_RS08660 (P3L57_08660) trmFO 1714316..1715623 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3L57_RS08665 (P3L57_08665) xerC 1715691..1716605 (+) 915 WP_069486521.1 tyrosine recombinase XerC -
  P3L57_RS08670 (P3L57_08670) clpQ 1716618..1717163 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  P3L57_RS08675 (P3L57_08675) hslU 1717171..1718583 (+) 1413 WP_255238337.1 HslU--HslV peptidase ATPase subunit -
  P3L57_RS08680 (P3L57_08680) codY 1718622..1719401 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P3L57_RS08685 (P3L57_08685) flgB 1719784..1720173 (+) 390 WP_044155900.1 flagellar basal body rod protein FlgB -
  P3L57_RS08690 (P3L57_08690) flgC 1720173..1720625 (+) 453 WP_069486522.1 flagellar basal body rod protein FlgC -
  P3L57_RS08695 (P3L57_08695) fliE 1720636..1720956 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  P3L57_RS08700 (P3L57_08700) fliF 1721002..1722612 (+) 1611 WP_069486523.1 flagellar basal-body MS-ring/collar protein FliF -
  P3L57_RS08705 (P3L57_08705) fliG 1722625..1723641 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  P3L57_RS08710 (P3L57_08710) fliH 1723634..1724386 (+) 753 WP_069486524.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=805920 P3L57_RS08680 WP_003220850.1 1718622..1719401(+) (codY) [Bacillus sp. B28]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=805920 P3L57_RS08680 WP_003220850.1 1718622..1719401(+) (codY) [Bacillus sp. B28]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467