Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3L57_RS08650 Genome accession   NZ_CP120511
Coordinates   1711077..1711976 (+) Length   299 a.a.
NCBI ID   WP_059335799.1    Uniprot ID   -
Organism   Bacillus sp. B28     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1706077..1716976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L57_RS08630 (P3L57_08630) - 1706746..1708476 (+) 1731 WP_069486629.1 hypothetical protein -
  P3L57_RS08635 (P3L57_08635) - 1708473..1708754 (+) 282 WP_059292791.1 FlhB-like flagellar biosynthesis protein -
  P3L57_RS08640 (P3L57_08640) sucC 1708928..1710085 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  P3L57_RS08645 (P3L57_08645) sucD 1710114..1711016 (+) 903 WP_069486520.1 succinate--CoA ligase subunit alpha -
  P3L57_RS08650 (P3L57_08650) dprA 1711077..1711976 (+) 900 WP_059335799.1 DNA-processing protein DprA Machinery gene
  P3L57_RS08655 (P3L57_08655) topA 1712165..1714240 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  P3L57_RS08660 (P3L57_08660) trmFO 1714316..1715623 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3L57_RS08665 (P3L57_08665) xerC 1715691..1716605 (+) 915 WP_069486521.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.28 Da        Isoelectric Point: 9.3995

>NTDB_id=805919 P3L57_RS08650 WP_059335799.1 1711077..1711976(+) (dprA) [Bacillus sp. B28]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=805919 P3L57_RS08650 WP_059335799.1 1711077..1711976(+) (dprA) [Bacillus sp. B28]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCTGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836