Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ62_RS00275 Genome accession   NZ_CP134566
Coordinates   60470..61735 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain XH1038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55470..66735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ62_RS00245 (RKQ62_00250) mutY 55639..56673 (-) 1035 WP_005127811.1 A/G-specific adenine glycosylase -
  RKQ62_RS00250 (RKQ62_00255) - 56814..57176 (-) 363 WP_000130110.1 HIT family protein -
  RKQ62_RS00255 (RKQ62_00260) - 57362..58099 (-) 738 WP_005127812.1 dienelactone hydrolase family protein -
  RKQ62_RS00260 (RKQ62_00265) - 58271..58429 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ62_RS00265 (RKQ62_00270) - 58624..59082 (+) 459 WP_005127813.1 YcgN family cysteine cluster protein -
  RKQ62_RS00270 (RKQ62_00275) - 59192..60364 (+) 1173 WP_005127814.1 PQQ-dependent sugar dehydrogenase -
  RKQ62_RS00275 (RKQ62_00280) rarA 60470..61735 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  RKQ62_RS00280 (RKQ62_00285) - 61751..62590 (-) 840 WP_000349489.1 formate/nitrite transporter family protein -
  RKQ62_RS00285 (RKQ62_00290) - 62876..63079 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ62_RS00290 (RKQ62_00295) purC 63272..63991 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ62_RS00295 (RKQ62_00300) - 64029..64631 (-) 603 WP_001177091.1 hypothetical protein -
  RKQ62_RS00300 (RKQ62_00305) dapA 64647..65540 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ62_RS00305 (RKQ62_00310) pncA 65870..66514 (+) 645 WP_005127819.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=805540 RKQ62_RS00275 WP_001285409.1 60470..61735(+) (rarA) [Acinetobacter baumannii strain XH1038]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805540 RKQ62_RS00275 WP_001285409.1 60470..61735(+) (rarA) [Acinetobacter baumannii strain XH1038]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387