Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ66_RS05440 Genome accession   NZ_CP134560
Coordinates   1158218..1159483 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain XH1042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153218..1164483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ66_RS05410 (RKQ66_05410) pncA 1153440..1154084 (-) 645 WP_002019453.1 bifunctional nicotinamidase/pyrazinamidase -
  RKQ66_RS05415 (RKQ66_05415) dapA 1154414..1155307 (+) 894 WP_000193601.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ66_RS05420 (RKQ66_05420) - 1155323..1155925 (+) 603 WP_001177091.1 hypothetical protein -
  RKQ66_RS05425 (RKQ66_05425) purC 1155962..1156681 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ66_RS05430 (RKQ66_05430) - 1156874..1157077 (+) 204 WP_000418560.1 hypothetical protein -
  RKQ66_RS05435 (RKQ66_05435) - 1157363..1158202 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  RKQ66_RS05440 (RKQ66_05440) rarA 1158218..1159483 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  RKQ66_RS05445 (RKQ66_05445) - 1159589..1160761 (-) 1173 WP_000986280.1 PQQ-dependent sugar dehydrogenase -
  RKQ66_RS05450 (RKQ66_05450) - 1160871..1161329 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ66_RS05455 (RKQ66_05455) - 1161524..1161682 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ66_RS05460 (RKQ66_05460) - 1161854..1162591 (+) 738 WP_000100772.1 dienelactone hydrolase family protein -
  RKQ66_RS05465 (RKQ66_05465) - 1162777..1163139 (+) 363 WP_000130110.1 HIT family protein -
  RKQ66_RS05470 (RKQ66_05470) mutY 1163280..1164314 (+) 1035 WP_001113863.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=805271 RKQ66_RS05440 WP_001285409.1 1158218..1159483(-) (rarA) [Acinetobacter baumannii strain XH1042]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805271 RKQ66_RS05440 WP_001285409.1 1158218..1159483(-) (rarA) [Acinetobacter baumannii strain XH1042]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAT
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387