Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ68_RS00275 Genome accession   NZ_CP134555
Coordinates   60458..61723 (+) Length   421 a.a.
NCBI ID   WP_108564114.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1044     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55458..66723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS00245 (RKQ68_00250) mutY 55625..56659 (-) 1035 WP_108564115.1 A/G-specific adenine glycosylase -
  RKQ68_RS00250 (RKQ68_00255) - 56800..57162 (-) 363 WP_000130110.1 HIT family protein -
  RKQ68_RS00255 (RKQ68_00260) - 57350..58087 (-) 738 WP_000100774.1 dienelactone hydrolase family protein -
  RKQ68_RS00260 (RKQ68_00265) - 58259..58417 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ68_RS00265 (RKQ68_00270) - 58612..59070 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  RKQ68_RS00270 (RKQ68_00275) - 59180..60352 (+) 1173 WP_209767060.1 PQQ-dependent sugar dehydrogenase -
  RKQ68_RS00275 (RKQ68_00280) rarA 60458..61723 (+) 1266 WP_108564114.1 replication-associated recombination protein A Machinery gene
  RKQ68_RS00280 (RKQ68_00285) - 61739..62578 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  RKQ68_RS00285 (RKQ68_00290) - 62826..64059 (+) 1234 Protein_51 IS3 family transposase -
  RKQ68_RS00290 (RKQ68_00295) - 64190..64393 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ68_RS00295 (RKQ68_00300) purC 64586..65305 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ68_RS00300 (RKQ68_00305) - 65342..65944 (-) 603 WP_001177091.1 hypothetical protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46944.66 Da        Isoelectric Point: 6.1908

>NTDB_id=805094 RKQ68_RS00275 WP_108564114.1 60458..61723(+) (rarA) [Acinetobacter baumannii strain XH1044]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAKSGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805094 RKQ68_RS00275 WP_108564114.1 60458..61723(+) (rarA) [Acinetobacter baumannii strain XH1044]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAGGTGATTGCAAAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACTTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375