Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L6499_RS21760 Genome accession   NZ_AP022986
Coordinates   4207383..4209719 (-) Length   778 a.a.
NCBI ID   WP_202322124.1    Uniprot ID   -
Organism   Bacillus cereus strain 30052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4202383..4214719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6499_RS21735 (BC30052_4348) - 4205045..4205389 (+) 345 WP_000209457.1 PH domain-containing protein -
  L6499_RS21740 (BC30052_4349) - 4205428..4206495 (-) 1068 WP_000793123.1 AI-2E family transporter -
  L6499_RS21745 (BC30052_4350) - 4206672..4206884 (+) 213 WP_000242546.1 hypothetical protein -
  L6499_RS21750 (BC30052_4351) - 4206920..4207048 (-) 129 WP_001053553.1 YrzQ family protein -
  L6499_RS21755 (BC30052_4352) - 4207067..4207255 (-) 189 WP_000469281.1 hypothetical protein -
  L6499_RS21760 (BC30052_4353) recD2 4207383..4209719 (-) 2337 WP_202322124.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L6499_RS21765 (BC30052_4354) - 4209815..4210474 (-) 660 WP_000066395.1 tetratricopeptide repeat protein -
  L6499_RS21770 (BC30052_4355) mnmA 4210585..4211700 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  L6499_RS21775 (BC30052_4356) - 4211717..4212862 (-) 1146 WP_000439913.1 cysteine desulfurase family protein -
  L6499_RS21780 (BC30052_4357) - 4212898..4213314 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87394.90 Da        Isoelectric Point: 5.2015

>NTDB_id=80506 L6499_RS21760 WP_202322124.1 4207383..4209719(-) (recD2) [Bacillus cereus strain 30052]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLIRETMSLLNNQEGRVAEEDVVGCIEMMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMSQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=80506 L6499_RS21760 WP_202322124.1 4207383..4209719(-) (recD2) [Bacillus cereus strain 30052]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTTGAAACATTTAAGAAAGAATTGCCACAAACAAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTAGACGGGATTGGTTTTGGTAGGGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTATAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGGCTGAGGAAGACGTTGTAGGCTGTATTGAAATGATGCAAAGTGAAGGAAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCGACGCTGTTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAGTCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACATTAGGCGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCAAATGAATACAGTGATGATAATCCATTTCCTATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGCACAATTCACCGTTT
ACTTGGATGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGGCAAGTATTGAAAGATTTATTAAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTTTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTATTTAATGGTGATATCGGTGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCTTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCCATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581

Multiple sequence alignment