Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKQ69_RS00275 Genome accession   NZ_CP134553
Coordinates   60653..61918 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain XH1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55653..66918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ69_RS00245 (RKQ69_00250) mutY 55822..56856 (-) 1035 WP_001113870.1 A/G-specific adenine glycosylase -
  RKQ69_RS00250 (RKQ69_00255) - 56997..57359 (-) 363 WP_000130110.1 HIT family protein -
  RKQ69_RS00255 (RKQ69_00260) - 57545..58282 (-) 738 WP_000100767.1 dienelactone hydrolase family protein -
  RKQ69_RS00260 (RKQ69_00265) - 58454..58612 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RKQ69_RS00265 (RKQ69_00270) - 58807..59265 (+) 459 WP_005130520.1 YcgN family cysteine cluster protein -
  RKQ69_RS00270 (RKQ69_00275) - 59378..60547 (+) 1170 WP_012392008.1 PQQ-dependent sugar dehydrogenase -
  RKQ69_RS00275 (RKQ69_00280) rarA 60653..61918 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  RKQ69_RS00280 (RKQ69_00285) - 61934..62773 (-) 840 WP_000349488.1 formate/nitrite transporter family protein -
  RKQ69_RS00285 (RKQ69_00290) - 63059..63262 (-) 204 WP_000418560.1 hypothetical protein -
  RKQ69_RS00290 (RKQ69_00295) purC 63455..64174 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RKQ69_RS00295 (RKQ69_00300) - 64211..64813 (-) 603 WP_001177091.1 hypothetical protein -
  RKQ69_RS00300 (RKQ69_00305) dapA 64829..65722 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RKQ69_RS00305 (RKQ69_00310) pncA 66052..66696 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=805019 RKQ69_RS00275 WP_001285409.1 60653..61918(+) (rarA) [Acinetobacter baumannii strain XH1045]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=805019 RKQ69_RS00275 WP_001285409.1 60653..61918(+) (rarA) [Acinetobacter baumannii strain XH1045]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCGAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387