Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   RKQ70_RS05940 Genome accession   NZ_CP134552
Coordinates   1278882..1280639 (+) Length   585 a.a.
NCBI ID   WP_001020910.1    Uniprot ID   A0A0D5YH74
Organism   Acinetobacter baumannii strain XH1047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273882..1285639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ70_RS05920 (RKQ70_05930) - 1274780..1275649 (+) 870 WP_000117593.1 PhzF family phenazine biosynthesis protein -
  RKQ70_RS05925 (RKQ70_05935) - 1275704..1276483 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  RKQ70_RS05930 (RKQ70_05940) tsaA 1276588..1277316 (+) 729 WP_001985377.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  RKQ70_RS05935 (RKQ70_05945) - 1277326..1278594 (-) 1269 WP_001052957.1 DUF4010 domain-containing protein -
  RKQ70_RS05940 (RKQ70_05950) pilB 1278882..1280639 (+) 1758 WP_001020910.1 GspE/PulE family protein Machinery gene
  RKQ70_RS05945 (RKQ70_05955) - 1280721..1281080 (+) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  RKQ70_RS05950 (RKQ70_05960) - 1281188..1281850 (+) 663 WP_001221450.1 response regulator transcription factor -
  RKQ70_RS05955 (RKQ70_05965) - 1281847..1283205 (+) 1359 WP_000841565.1 cell wall metabolism sensor histidine kinase WalK -
  RKQ70_RS05960 (RKQ70_05970) hemP 1283272..1283442 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  RKQ70_RS05965 (RKQ70_05975) - 1283579..1284478 (+) 900 WP_001125741.1 NUDIX domain-containing protein -
  RKQ70_RS05970 (RKQ70_05980) - 1284500..1285051 (-) 552 WP_000913439.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66810.51 Da        Isoelectric Point: 7.0124

>NTDB_id=804973 RKQ70_RS05940 WP_001020910.1 1278882..1280639(+) (pilB) [Acinetobacter baumannii strain XH1047]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLSVQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGSTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=804973 RKQ70_RS05940 WP_001020910.1 1278882..1280639(+) (pilB) [Acinetobacter baumannii strain XH1047]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGACAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATCTAA
AAGACCAACACCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGTGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGCCAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCTTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAAGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCACAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTCGACCACCTTGGAAGAGGTGCTGCGAGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YH74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.993

100

0.374