Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PYS58_RS11425 Genome accession   NZ_CP120209
Coordinates   2484358..2485011 (+) Length   217 a.a.
NCBI ID   WP_276285402.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain Ery-6B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2479358..2490011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYS58_RS11410 (PYS58_11410) aceA 2479753..2481036 (-) 1284 WP_346429909.1 isocitrate lyase -
  PYS58_RS11415 (PYS58_11415) aceB 2481119..2482693 (-) 1575 WP_276285400.1 malate synthase A -
  PYS58_RS11420 (PYS58_11420) - 2482820..2484292 (+) 1473 WP_276285401.1 helix-turn-helix transcriptional regulator -
  PYS58_RS11425 (PYS58_11425) comF 2484358..2485011 (+) 654 WP_276285402.1 double zinc ribbon domain-containing protein Machinery gene
  PYS58_RS11430 (PYS58_11430) - 2485116..2485802 (+) 687 WP_276285403.1 alpha/beta hydrolase -
  PYS58_RS11435 (PYS58_11435) upp 2485805..2486455 (-) 651 WP_185247788.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25601.65 Da        Isoelectric Point: 8.3341

>NTDB_id=804737 PYS58_RS11425 WP_276285402.1 2484358..2485011(+) (comF) [Chryseobacterium indologenes strain Ery-6B]
MILDLLFPNRCLHCNRIIEAELLVCNLCFGQIHFTYYDYTKNNPVKERCKLFFPVENTYALIQFEEENLSRKIIHELKYR
NREITGKILAEWTIERLNFKDQKPDLLVSVPLHPKKQRERGYNQLHLYTETLSKHYQIPFDHELIKRNYYSKAQALKDKK
HRLETINTFSTTQPITGKHILLIDDVFTTGTTISSIAWEILNAGDNKISVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=804737 PYS58_RS11425 WP_276285402.1 2484358..2485011(+) (comF) [Chryseobacterium indologenes strain Ery-6B]
ATGATATTAGACCTGCTTTTTCCCAACCGGTGTCTTCATTGTAACAGAATTATTGAGGCCGAACTTTTGGTTTGTAATTT
ATGTTTTGGGCAAATTCATTTTACATATTACGACTACACCAAAAATAATCCGGTGAAAGAAAGATGTAAACTCTTTTTTC
CTGTTGAGAATACCTATGCACTCATTCAGTTTGAAGAAGAAAACCTAAGCCGGAAAATCATTCATGAATTAAAATACAGA
AACAGAGAAATCACGGGAAAAATTCTGGCAGAATGGACTATCGAGCGATTGAATTTCAAAGATCAGAAACCTGATCTTCT
GGTAAGCGTTCCTCTTCATCCTAAAAAACAGAGAGAAAGAGGGTACAATCAGCTTCATTTGTATACAGAAACTCTTTCAA
AACACTATCAAATCCCTTTTGATCATGAACTCATCAAGAGAAACTATTACTCCAAAGCACAAGCTCTAAAGGATAAGAAA
CATCGATTGGAAACAATCAACACATTTTCGACTACCCAACCCATAACAGGAAAACATATTCTGCTCATTGATGATGTTTT
TACCACAGGAACTACCATATCTTCCATTGCCTGGGAAATTCTGAATGCCGGAGATAATAAGATAAGTGTCCTGGTAATGG
CGATGGATGTATAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.926

99.539

0.507