Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   O2602_RS09810 Genome accession   NZ_CP120208
Coordinates   2051420..2053843 (-) Length   807 a.a.
NCBI ID   WP_276210329.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HOM5301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2046420..2058843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2602_RS09790 pdhA 2046587..2047648 (+) 1062 WP_276210326.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  O2602_RS09795 - 2047674..2048669 (+) 996 WP_276211229.1 alpha-ketoacid dehydrogenase subunit beta -
  O2602_RS09800 - 2048682..2049932 (+) 1251 WP_276210327.1 dihydrolipoamide acetyltransferase family protein -
  O2602_RS09805 - 2049990..2051375 (+) 1386 WP_276210328.1 amino acid permease -
  O2602_RS09810 recD2 2051420..2053843 (-) 2424 WP_276210329.1 ATP-dependent RecD-like DNA helicase Machinery gene
  O2602_RS09815 - 2053854..2054522 (-) 669 WP_276210330.1 tetratricopeptide repeat protein -
  O2602_RS09820 mnmA 2054892..2056007 (-) 1116 WP_276210331.1 tRNA 2-thiouridine(34) synthase MnmA -
  O2602_RS09825 - 2056023..2057168 (-) 1146 WP_276210332.1 cysteine desulfurase family protein -
  O2602_RS09830 - 2057185..2057604 (-) 420 WP_014097908.1 Rrf2 family transcriptional regulator -
  O2602_RS09835 - 2057916..2058584 (-) 669 WP_276210333.1 cell surface protein -
  O2602_RS17190 - 2058615..2058737 (-) 123 Protein_1920 matrixin family metalloprotease -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90714.64 Da        Isoelectric Point: 4.8298

>NTDB_id=804716 O2602_RS09810 WP_276210329.1 2051420..2053843(-) (recD2) [Heyndrickxia coagulans strain HOM5301]
MEKQHAMDLFQDEENFIKGKHLATIFHNEQNLYSVIRVRVEETNTGLEDKETVITGYFPRIHEQETYTFFGKMQEHPKFG
PQFQANRFQKDIPNTKQGVIEYLSSDLFNGIGKKTAERIVGVLGENAISKILENPAALDEVPKLAPEKAQLIHDTLVEHQ
GLERVMIGLAQYGFGPQIAMRIYQVYEDEALEKIAQNPYQLVDDIKGIGFGRADELGRQLGISGTHPHRIQAGCCYMLEM
ESMQHGHVYVQKEELAQDVKALLEEYQHVEIPIDLIENELVKLQEESKVIMEEDKVYLPSLYFSEKGIVSNIERIMSQTE
YAEQFPESEFLLALGSLEERLGVEYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYGELHGVSLDPQTYKKDE
AFPIVLAAPTGRAAKRMAESTGLPAMTIHRLLGMTGMEDLDDSEERQVEGKLVIIDEMSMVDTWLANQLLKALPDEIQVI
MVGDEDQLPSVGPGQVLKDLLKSGAIPVVRLTDIYRQKDGSSIIELAHHVKNGRIPENIFQMQADRSFIRCSSGQVAEAV
EKVVKSAKRKGYTAKDIQVLAPMYRGPAGIDRLNSLLQNIFNPNENGARKELKHGDAVYRIGDKVLQLVNQPEHGVYNGD
IGEIVSLFTAKENTEKQDMLIVSFDGIEVTYTKPDFNQITLAYCCSIHKSQGSEFPVVILPVVRSYYRMLRRNLLYTAIT
RSKKILILLGEEPAFRMGVEREDDQKRKTTLCEKLAEALKTEQKEAGAETLLSLTEENWDRVDPMIGMEGITPYTYAEEG
QTASQPD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=804716 O2602_RS09810 WP_276210329.1 2051420..2053843(-) (recD2) [Heyndrickxia coagulans strain HOM5301]
TTGGAAAAACAGCATGCGATGGATTTATTCCAGGACGAGGAAAATTTTATAAAAGGAAAGCATCTCGCGACCATCTTCCA
TAACGAGCAAAATTTGTATTCCGTCATCCGTGTGCGGGTGGAAGAGACCAATACCGGGCTGGAAGATAAGGAAACGGTGA
TTACCGGCTATTTTCCGCGCATCCATGAACAGGAAACGTACACCTTTTTTGGAAAAATGCAGGAACACCCGAAATTCGGC
CCTCAGTTCCAGGCAAACCGCTTCCAAAAAGACATCCCTAATACAAAGCAGGGCGTTATTGAGTATCTTTCCAGTGATTT
ATTCAACGGCATCGGCAAAAAAACGGCGGAGCGGATCGTTGGCGTGCTCGGTGAAAATGCGATCAGCAAAATATTGGAAA
ATCCCGCCGCTCTTGATGAAGTACCGAAACTGGCACCGGAAAAAGCGCAGCTGATCCATGATACGTTAGTTGAACACCAG
GGGCTTGAACGTGTCATGATCGGACTTGCACAATACGGTTTCGGGCCGCAGATTGCGATGCGCATTTACCAGGTTTACGA
GGATGAGGCGCTCGAAAAAATCGCGCAAAATCCGTACCAGCTCGTCGATGATATCAAAGGCATCGGTTTCGGGCGGGCCG
ATGAACTCGGCCGGCAGCTCGGCATCAGCGGGACGCATCCGCACCGCATCCAGGCCGGCTGCTGTTACATGCTGGAAATG
GAAAGCATGCAACACGGTCATGTGTACGTCCAGAAAGAAGAACTTGCACAGGATGTCAAAGCCCTTTTGGAAGAATACCA
GCATGTTGAAATCCCGATTGACCTGATTGAAAATGAGCTGGTGAAACTGCAGGAAGAGAGCAAAGTGATCATGGAAGAAG
ACAAAGTCTATCTTCCGTCCCTCTATTTTTCGGAAAAAGGAATCGTTTCCAATATTGAGCGGATTATGTCGCAAACCGAG
TATGCGGAACAGTTCCCGGAGTCTGAATTCCTGCTTGCTCTCGGCAGTCTTGAAGAACGGCTTGGGGTCGAGTATGCCCC
GTCGCAAAAGGAAGCCATCCAAAAAGCGCTGATGAGTCCGATGATGATTTTAACGGGCGGGCCCGGCACAGGGAAAACAA
CGGTCATTAAAGGGATTGTGGAACTGTACGGCGAGTTGCACGGCGTCTCGCTTGACCCGCAAACCTATAAAAAAGATGAG
GCGTTTCCGATTGTTCTCGCGGCGCCGACAGGGAGGGCCGCGAAAAGAATGGCGGAATCAACCGGTCTGCCGGCGATGAC
GATCCACCGCCTGCTCGGCATGACCGGCATGGAGGATCTGGACGATTCAGAGGAACGGCAAGTAGAAGGCAAGCTCGTCA
TCATTGATGAAATGTCGATGGTCGATACATGGCTTGCGAACCAGCTGTTAAAGGCGCTGCCGGATGAAATTCAAGTCATC
ATGGTCGGGGATGAAGACCAGCTGCCGTCCGTCGGTCCGGGCCAGGTGCTGAAAGATTTATTGAAATCGGGCGCCATCCC
GGTTGTCAGGCTGACAGATATATACAGGCAGAAAGATGGTTCGTCGATTATTGAACTGGCCCATCATGTCAAAAATGGCC
GTATTCCGGAAAATATTTTTCAAATGCAGGCAGATCGTTCGTTTATCCGCTGTTCTTCCGGGCAGGTGGCGGAAGCGGTG
GAAAAAGTGGTGAAAAGCGCGAAACGGAAAGGCTATACGGCAAAAGACATTCAGGTGCTGGCGCCGATGTACAGGGGGCC
GGCCGGCATTGACCGTCTGAACAGCCTTTTGCAAAATATTTTTAATCCGAATGAAAACGGGGCCCGCAAAGAGCTGAAGC
ACGGGGACGCGGTTTACCGGATCGGCGATAAGGTGCTGCAGCTTGTCAACCAGCCGGAGCACGGGGTGTATAACGGCGAT
ATCGGCGAGATTGTCTCGCTTTTTACCGCAAAAGAAAATACGGAAAAACAAGATATGCTCATCGTTTCTTTTGACGGGAT
TGAAGTGACGTATACGAAGCCTGATTTCAATCAGATTACGCTTGCGTATTGCTGTTCGATCCACAAATCGCAAGGAAGCG
AGTTTCCGGTCGTGATTTTGCCGGTTGTCCGCAGCTATTACCGGATGCTGCGCCGAAACTTGCTGTATACGGCGATTACA
AGAAGCAAAAAAATTTTAATCCTGCTTGGTGAAGAACCGGCTTTCCGGATGGGTGTGGAAAGGGAAGATGACCAGAAACG
GAAAACGACACTGTGTGAAAAACTGGCTGAGGCATTAAAAACGGAACAAAAAGAGGCAGGGGCGGAGACACTCCTGTCTT
TAACAGAAGAAAATTGGGACCGGGTCGACCCGATGATTGGCATGGAGGGCATTACCCCGTACACGTACGCAGAAGAAGGA
CAGACCGCGTCCCAACCGGATTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

AAA domain (AAA_30)

(345-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.049

99.257

0.606