Detailed information NTG0804616

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: P3T88_RS05970
• Genome accession: NZ_CP120200
• Coordinates: 1259158..1261557 (+)
• Length: 799 a.a.
• NCBI ID: WP_323696361.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain Dog003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1254158..1266557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3T88_RS05940 (P3T88_05940)	-	1254334..1254519 (+)	186	WP_014613736.1	CsbD family protein	-
P3T88_RS05945 (P3T88_05945)	-	1254547..1254717 (+)	171	WP_199641366.1	hypothetical protein	-
P3T88_RS05950 (P3T88_05950)	-	1254983..1255999 (-)	1017	WP_014613737.1	LLM class flavin-dependent oxidoreductase	-
P3T88_RS05955 (P3T88_05955)	-	1256208..1257353 (+)	1146	WP_014613738.1	cysteine desulfurase family protein	-
P3T88_RS05960 (P3T88_05960)	mnmA	1257386..1258465 (+)	1080	WP_155259758.1	tRNA 2-thiouridine(34) synthase MnmA	-
P3T88_RS05965 (P3T88_05965)	-	1258481..1259155 (+)	675	WP_020219749.1	tetratricopeptide repeat protein	-
P3T88_RS05970 (P3T88_05970)	recD2	1259158..1261557 (+)	2400	WP_323696361.1	ATP-dependent RecD-like DNA helicase	Machinery gene
P3T88_RS05975 (P3T88_05975)	alaS	1261803..1264433 (+)	2631	WP_065520479.1	alanine--tRNA ligase	-
P3T88_RS05980 (P3T88_05980)	-	1264496..1264768 (+)	273	WP_014613743.1	IreB family regulatory phosphoprotein	-
P3T88_RS05985 (P3T88_05985)	ruvX	1264761..1265189 (+)	429	WP_014613744.1	Holliday junction resolvase RuvX	-
P3T88_RS05990 (P3T88_05990)	-	1265203..1265523 (+)	321	WP_014613745.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 799 a.a.
• Molecular weight: 90316.61 Da
• Isoelectric Point: 4.5526

>NTDB_id=804616 P3T88_RS05970 WP_323696361.1 1259158..1261557(+) (recD2) [Staphylococcus pseudintermedius strain Dog003]
MENPTLFDHTFIKGTVEMILFQNTDNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDESYTFKGQIVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIEQVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEDTCIKQG
HTYLPQEALINETIQLLSQGKDSSVDYDTMTQILAEVVEEKRLVNQEEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLMQYFTPEDTDDKTDTDTASAEFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide

• Length: 2400 bp

>NTDB_id=804616 P3T88_RS05970 WP_323696361.1 1259158..1261557(+) (recD2) [Staphylococcus pseudintermedius strain Dog003]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAGATGATTTTGTTTCAGAATACGGACAATCA
TTACACAGTGCTTAAAGTTGAAATAGAAGAAACAAATGGTGACTTTGATGATATGGCAACAGTGGTTGGATATTTTCCGA
ATATGGTAGAAGATGAGTCGTACACTTTTAAAGGCCAAATCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCTGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCTGTTATTGCATATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACAGCAGAATCCATTGTCAATACATTAGGTGAAAATGCGATTCATGACATTTTGAAAGATGAATCTGTCATCGAAC
AAGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTTGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACATTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCGGACCAACTGGCACAACAGC
TCGGTATTCATCCAGAGCACCCCGACCGTTTAAAAGCCGGCTTACTTTATTTAGTTGAAGATACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAGGGCAAAGATTCAAGTGTCGACTA
TGACACCATGACGCAAATTTTAGCTGAAGTAGTTGAAGAAAAACGACTAGTGAATCAAGAGGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGAGAGCATTTAACTACATTTGAT
GCTTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTACATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCGATTCAACATAAAGTCATGCTTCTCACGGGTGGACCAGGTACAGGGAAAACAACTGTCATTAAAGGAATTG
TCCAGTTATATGCAGAAATTCACGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCGACAGGGTTAGAAGCAATGACGATTCACCGCTTAATTGG
TTGGAATCAAGATACGAAGCCGCAAGACAAATTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAAATGTCTA
TGGTCGACACTTGGCTATTCCATCAATTTATGGATGCAGTCCCTATAGATGCCCAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTTCCATCAGTTGGCCCTGGACAAGTTTTTAAAGATCTCATTGATGCAAATGTATTACCGCGCATCAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGTATGAAACTCGGTGAAAAAGTTGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTCGTAGAAAAAGTCGTCAACAATGCC
GTGCAAAAAGGGTATACAATGGCAGATATTCAAGTGCTCGCGCCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTCAA
TCAAATTTTACAAGGCATTTTGAACCCTTTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTTCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCAAACGATAATGTGTTTAATGGTGATATTGGTGTTATTGTCGGTATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTTGATTATGATGGGAACGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACACATGCATATTGTACTTCGATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTCATCATGC
CGATTGTTAAGCAGTATTTTAGAATGTTACAAAAACCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTTGGTGATGCAGATGCTTTTAATATCGGGTTAGCGACTGCGGGTCAAACGCGATTAACACAATTACAAACGTTCTT
AATGCAATATTTTACTCCGGAAGATACTGATGATAAAACAGATACTGATACAGCTTCGGCTGAGTTTATTTTAACTGAAG
CGACTATGTTTAAAATCCATCCGATGATTAATATGGGTGAAGTGACACCTTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (674-721)

• AAA domain (AAA_30) (339-546)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-656)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.31	99.75	0.492