Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RKV28_RS06765 Genome accession   NZ_CP134534
Coordinates   1346158..1346931 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain KNIH_5618     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341158..1351931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS06745 trmFO 1341501..1342808 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RKV28_RS06750 xerC 1343226..1344122 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  RKV28_RS06755 hslV 1344119..1344664 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RKV28_RS06760 hslU 1344730..1346133 (+) 1404 WP_000379044.1 ATP-dependent protease ATPase subunit HslU -
  RKV28_RS06765 codY 1346158..1346931 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RKV28_RS06770 - 1347005..1347079 (+) 75 WP_031761472.1 hypothetical protein -
  RKV28_RS06775 rpsB 1347278..1348045 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RKV28_RS06780 - 1348079..1348192 (+) 114 WP_001789890.1 hypothetical protein -
  RKV28_RS06785 tsf 1348227..1349108 (+) 882 WP_000201392.1 translation elongation factor Ts -
  RKV28_RS06790 pyrH 1349245..1349967 (+) 723 WP_000057330.1 UMP kinase -
  RKV28_RS06795 frr 1349986..1350540 (+) 555 WP_001280006.1 ribosome recycling factor -
  RKV28_RS06800 - 1350913..1351683 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=804446 RKV28_RS06765 WP_000055337.1 1346158..1346931(+) (codY) [Staphylococcus aureus strain KNIH_5618]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=804446 RKV28_RS06765 WP_000055337.1 1346158..1346931(+) (codY) [Staphylococcus aureus strain KNIH_5618]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428