Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RKV26_RS06275 Genome accession   NZ_CP134532
Coordinates   1265379..1266152 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain KNIH_6268     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260379..1271152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS06255 trmFO 1260723..1262030 (+) 1308 WP_311163755.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RKV26_RS06260 xerC 1262447..1263343 (+) 897 WP_154283919.1 tyrosine recombinase XerC -
  RKV26_RS06265 hslV 1263340..1263885 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RKV26_RS06270 hslU 1263951..1265354 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RKV26_RS06275 codY 1265379..1266152 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RKV26_RS06280 - 1266203..1266295 (+) 93 WP_001790530.1 hypothetical protein -
  RKV26_RS06285 rpsB 1266494..1267261 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RKV26_RS06290 - 1267295..1267408 (+) 114 WP_001789890.1 hypothetical protein -
  RKV26_RS06295 tsf 1267443..1268324 (+) 882 WP_267814812.1 translation elongation factor Ts -
  RKV26_RS06300 pyrH 1268461..1269183 (+) 723 WP_000057330.1 UMP kinase -
  RKV26_RS06305 frr 1269202..1269756 (+) 555 WP_001280006.1 ribosome recycling factor -
  RKV26_RS06310 - 1270129..1270899 (+) 771 WP_154283921.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=804268 RKV26_RS06275 WP_000055337.1 1265379..1266152(+) (codY) [Staphylococcus aureus strain KNIH_6268]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=804268 RKV26_RS06275 WP_000055337.1 1265379..1266152(+) (codY) [Staphylococcus aureus strain KNIH_6268]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACTATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428