Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RJD14_RS34150 Genome accession   NZ_CP134493
Coordinates   7518868..7519881 (-) Length   337 a.a.
NCBI ID   WP_311129652.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7513868..7524881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS34130 (RJD14_34130) - 7515753..7516307 (-) 555 WP_311129648.1 hypothetical protein -
  RJD14_RS34135 (RJD14_34135) - 7516392..7516964 (-) 573 WP_311129649.1 MauE/DoxX family redox-associated membrane protein -
  RJD14_RS34140 (RJD14_34140) - 7517071..7517262 (-) 192 WP_311129650.1 hypothetical protein -
  RJD14_RS34145 (RJD14_34145) - 7517518..7518858 (+) 1341 WP_311129651.1 XRE family transcriptional regulator -
  RJD14_RS34150 (RJD14_34150) amiE 7518868..7519881 (-) 1014 WP_311129652.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  RJD14_RS34155 (RJD14_34155) - 7519874..7521925 (-) 2052 WP_311129653.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  RJD14_RS34160 (RJD14_34160) - 7521940..7522866 (-) 927 WP_261679237.1 ABC transporter permease -
  RJD14_RS34165 (RJD14_34165) - 7522880..7524421 (-) 1542 WP_311129654.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36362.68 Da        Isoelectric Point: 7.3841

>NTDB_id=804222 RJD14_RS34150 WP_311129652.1 7518868..7519881(-) (amiE) [Streptomyces sp. CGMCC 4.1456]
MPERGTLLEATGLAKSFTVRRTVRGGTRLRALDGVDLTLGRGETLGLVGESGCGKSTLARVLLRLERPDAGTVRYEGVDP
FALSGAELLAWRRKVQMVFQDPFGSLNPRLSAADLIGEPWLAHRGLVPPSRRTARVAELLEMVGLRASDAARHPHEFSGG
QRQRIGIARALALEPEVIVCDEPVSALDLSVQAQVLNLLCDLRDELGLSYVFISHDLSVVRHLADRVAVMYLGRIAETGP
TEEVYERPRHPYTEALLSAAPSPVAGGGRRRQRIVLTGEIPSPADPPSGCRFRTRCPRARDLCAEAVPEPPPGAPLHGAA
CHFPLEETPEGTPAVTA

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=804222 RJD14_RS34150 WP_311129652.1 7518868..7519881(-) (amiE) [Streptomyces sp. CGMCC 4.1456]
ATGCCTGAACGCGGGACCCTGCTGGAGGCCACCGGTCTGGCAAAGAGCTTCACGGTCCGGCGGACCGTGCGCGGCGGCAC
CCGGCTGCGGGCGCTGGACGGGGTGGACCTGACCCTCGGGCGCGGGGAGACCCTCGGTCTCGTCGGCGAGTCCGGCTGCG
GCAAGTCCACGCTGGCCAGGGTCCTCCTGCGGCTGGAGCGGCCCGACGCGGGCACCGTGCGGTACGAGGGCGTCGACCCG
TTCGCGTTGTCGGGTGCGGAGCTGCTCGCCTGGCGGCGGAAGGTGCAGATGGTCTTCCAGGACCCGTTCGGTTCGCTCAA
CCCCCGCCTCAGTGCGGCGGATCTCATCGGGGAGCCCTGGCTGGCCCATCGCGGCCTCGTCCCCCCTTCGCGGCGGACGG
CGCGCGTCGCCGAACTGCTGGAGATGGTCGGTCTGCGCGCGTCGGACGCGGCCCGCCATCCGCACGAGTTCTCCGGTGGT
CAGCGGCAGCGGATCGGCATCGCCCGGGCCCTGGCGCTGGAGCCCGAAGTGATCGTCTGCGACGAACCCGTCTCCGCGCT
GGACCTGTCTGTACAGGCGCAGGTGCTCAACCTCCTGTGCGACCTGCGGGACGAGCTGGGGCTGTCGTACGTGTTCATCT
CGCACGACCTGTCCGTGGTGCGGCACCTCGCCGACCGGGTCGCCGTGATGTACCTCGGCAGGATCGCGGAGACGGGCCCG
ACGGAGGAGGTCTACGAGCGGCCGCGCCACCCCTACACGGAGGCGCTCCTGTCGGCGGCCCCCTCACCCGTGGCCGGCGG
TGGTCGCCGGCGGCAACGCATCGTGCTCACCGGCGAGATCCCCTCTCCTGCCGACCCGCCGTCCGGTTGCCGGTTCCGGA
CCCGGTGCCCTCGGGCGCGGGACCTGTGCGCCGAAGCCGTACCCGAACCTCCGCCCGGTGCGCCCCTCCACGGTGCGGCA
TGCCACTTCCCTCTGGAGGAGACACCCGAGGGGACACCCGCGGTCACGGCTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-184)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(237-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.735

100

0.374
  amiE Streptococcus thermophilus LMG 18311

36.55

100

0.371
  amiE Streptococcus thermophilus LMD-9

36.55

100

0.371