Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJW54_RS01800 Genome accession   NZ_CP134487
Coordinates   362687..363475 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 357687..368475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS01780 (RJW54_01770) - 358305..359264 (-) 960 WP_024394819.1 asparaginase -
  RJW54_RS01785 (RJW54_01775) - 359333..360698 (+) 1366 Protein_313 Cof-type HAD-IIB family hydrolase -
  RJW54_RS01790 (RJW54_01780) - 360714..361166 (-) 453 WP_004195772.1 universal stress protein -
  RJW54_RS01795 (RJW54_01785) - 361321..362535 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  RJW54_RS01800 (RJW54_01790) codY 362687..363475 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJW54_RS01805 (RJW54_01795) - 363477..364028 (+) 552 WP_029175305.1 cysteine hydrolase family protein -
  RJW54_RS01810 (RJW54_01800) rplS 364506..364853 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  RJW54_RS01815 (RJW54_01805) - 365039..365713 (+) 675 WP_012774968.1 hydrolase -
  RJW54_RS01825 (RJW54_01815) - 367050..368327 (+) 1278 WP_002938352.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=803977 RJW54_RS01800 WP_023369388.1 362687..363475(+) (codY) [Streptococcus suis strain MY1C3_3B]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=803977 RJW54_RS01800 WP_023369388.1 362687..363475(+) (codY) [Streptococcus suis strain MY1C3_3B]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTTCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCAAG
ATCGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACGGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496