Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RJW54_RS01190 Genome accession   NZ_CP134487
Coordinates   220675..223164 (-) Length   829 a.a.
NCBI ID   WP_172015517.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 215675..228164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS01175 (RJW54_01175) - 216471..217499 (+) 1029 WP_002935967.1 ABC transporter substrate-binding protein -
  RJW54_RS01180 (RJW54_01180) - 217593..218402 (+) 810 WP_002935966.1 hypothetical protein -
  RJW54_RS01185 (RJW54_01185) - 218575..220636 (+) 2062 Protein_200 heavy metal translocating P-type ATPase -
  RJW54_RS01190 (RJW54_01190) recD/recD2/recDB 220675..223164 (-) 2490 WP_172015517.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RJW54_RS01195 (RJW54_01195) lepB 223228..223857 (-) 630 WP_172015516.1 signal peptidase I -
  RJW54_RS01200 (RJW54_01200) rnhC 223867..224757 (-) 891 WP_014636770.1 ribonuclease HIII -
  RJW54_RS01205 (RJW54_01205) - 224842..225825 (+) 984 WP_172015515.1 Gfo/Idh/MocA family protein -
  RJW54_RS01210 (RJW54_01210) - 226174..227388 (+) 1215 WP_172015514.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93084.44 Da        Isoelectric Point: 4.5631

>NTDB_id=803973 RJW54_RS01190 WP_172015517.1 220675..223164(-) (recD/recD2/recDB) [Streptococcus suis strain MY1C3_3B]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQIAGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTAATTQTQPPTQPDTKEQVKVVKENNQQLSLLDQDQLEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=803973 RJW54_RS01190 WP_172015517.1 220675..223164(-) (recD/recD2/recDB) [Streptococcus suis strain MY1C3_3B]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCTGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAACTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGCCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCGCAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTAGAGAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCAAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTTCAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCCGACGGATG
AATGAATTGACAGGCCTGCCTTCCGCCACCATCCACCGCCACCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCTCAGACCCAAGTTCTGATTGTTGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCTTGAAAATTGATAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCCC
AAAACGAACAAATTCCAGCCTTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCAGGTATTCCTGCAAACGAAGTACAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAAATCACTCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTCCAGGTCGTTATCCTTCCTATCACTCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGCAAGGAAAG
CCTGATTAAAAAAGACGAAAGTAAAACAGCTGCAACCACACAAACCCAGCCCCCTACTCAGCCAGACACAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGACCAAGACCAACTAGAAAAAACAAGTCCCCAACCAACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-529)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.284

92.039

0.38