Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RJW49_RS09930 Genome accession   NZ_CP134477
Coordinates   1970632..1971918 (+) Length   428 a.a.
NCBI ID   WP_014736551.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1965632..1976918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS09890 (RJW49_09890) - 1965708..1966265 (-) 558 WP_311048049.1 hypothetical protein -
  RJW49_RS09895 (RJW49_09895) - 1966506..1967222 (-) 717 WP_024385529.1 DUF554 domain-containing protein -
  RJW49_RS09900 (RJW49_09900) - 1967227..1967973 (-) 747 WP_074393523.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RJW49_RS09905 (RJW49_09905) prmA 1967975..1968928 (-) 954 WP_014736546.1 50S ribosomal protein L11 methyltransferase -
  RJW49_RS09910 (RJW49_09910) - 1969141..1969245 (+) 105 WP_221737275.1 putative holin-like toxin -
  RJW49_RS09915 (RJW49_09915) - 1969400..1969753 (-) 354 WP_074393522.1 ASCH domain-containing protein -
  RJW49_RS09920 (RJW49_09920) - 1969755..1970225 (-) 471 WP_014736549.1 DUF3013 family protein -
  RJW49_RS09925 (RJW49_09925) - 1970227..1970562 (-) 336 WP_014736550.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  RJW49_RS09930 (RJW49_09930) rarA 1970632..1971918 (+) 1287 WP_014736551.1 replication-associated recombination protein A Machinery gene
  RJW49_RS09945 (RJW49_09945) nrdG 1972399..1972956 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RJW49_RS09950 (RJW49_09950) - 1973143..1973637 (-) 495 WP_014736552.1 GNAT family N-acetyltransferase -
  RJW49_RS09955 (RJW49_09955) - 1973639..1973875 (-) 237 Protein_1923 metallophosphatase -
  RJW49_RS09960 (RJW49_09960) - 1973996..1974130 (-) 135 WP_002939130.1 hypothetical protein -
  RJW49_RS09965 (RJW49_09965) nrdD 1974223..1976394 (-) 2172 WP_311048055.1 anaerobic ribonucleoside-triphosphate reductase -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47364.01 Da        Isoelectric Point: 6.5101

>NTDB_id=803946 RJW49_RS09930 WP_014736551.1 1970632..1971918(+) (rarA) [Streptococcus suis strain NLS40]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=803946 RJW49_RS09930 WP_014736551.1 1970632..1971918(+) (rarA) [Streptococcus suis strain NLS40]
ATGCCAGCCAATCTCGCTCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATTGATGCCAATATGCTGTCGTCTATGATTCTCTACGGTCCGCCGGGAATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGACTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCCTTGAAAACCAGCCATATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGCGAACGTGGTTTTGACTTCCCTATTACCATTGAGCCTGAGGCTCTGGATTTCCTAGCCAATGC
TACCAACGGTGACCTTCGTGCCGCCTACAATTCTCTAGAACTGGCTGTGCTTTCGACCAAGGAAAGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAATCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GATATCCTCTCCGCCCTACAAAAATCCATTCGAGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCGGAAGACCTGCCTAGTCTGGCTCGTCGCTTAACCGTTATTGCCTACGAAGACATCGGCTTAGCCAATCCAGAGGCAC
AGATTCATACGGTGACCGCCCTTGAAGCGGCGCAGAAAATCGGCTTTCCAGAGGCACGGATTTTGATTGCCAATGTGGTG
ATTGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTACGGAAAAACGG
CCATCTGCCCATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCACATGCCTATCCTGAGAAATGGGTGGACCAACAATACCTGCCTGATAAGTTACTTCATGCGGACTACTTCACTGCC
AATGACACCGGCAAATATGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.569

97.664

0.582