Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RJW49_RS06000 Genome accession   NZ_CP134477
Coordinates   1148296..1150032 (-) Length   578 a.a.
NCBI ID   WP_014735890.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143296..1155032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS05980 (RJW49_05980) thrB 1143300..1144160 (-) 861 WP_011922331.1 homoserine kinase -
  RJW49_RS05985 (RJW49_05985) - 1144164..1145450 (-) 1287 WP_074393688.1 homoserine dehydrogenase -
  RJW49_RS05990 (RJW49_05990) - 1145555..1146478 (+) 924 WP_014735889.1 polysaccharide deacetylase family protein -
  RJW49_RS05995 (RJW49_05995) - 1146606..1148287 (-) 1682 Protein_1139 ABC transporter ATP-binding protein -
  RJW49_RS06000 (RJW49_06000) rcrP 1148296..1150032 (-) 1737 WP_014735890.1 ABC transporter ATP-binding protein Regulator
  RJW49_RS06005 (RJW49_06005) - 1150108..1150350 (-) 243 WP_012028079.1 KH domain-containing protein -
  RJW49_RS06010 (RJW49_06010) rpsP 1150372..1150644 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RJW49_RS06015 (RJW49_06015) - 1150769..1151077 (-) 309 WP_014735891.1 DUF4298 domain-containing protein -
  RJW49_RS06020 (RJW49_06020) pcp 1151077..1151724 (-) 648 WP_074393687.1 pyroglutamyl-peptidase I -
  RJW49_RS06025 (RJW49_06025) - 1151721..1152476 (-) 756 WP_074393686.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65141.45 Da        Isoelectric Point: 5.1916

>NTDB_id=803913 RJW49_RS06000 WP_014735890.1 1148296..1150032(-) (rcrP) [Streptococcus suis strain NLS40]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALALLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRNKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=803913 RJW49_RS06000 WP_014735890.1 1148296..1150032(-) (rcrP) [Streptococcus suis strain NLS40]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTTATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCTCTTTCTGAAAAGCAACAGAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATTATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCTTTTACAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAACAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTTGGAACCATTATGG
ATGCCGACCAGATCATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCATAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.667

100

0.401