Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJW49_RS01740 Genome accession   NZ_CP134477
Coordinates   340766..341554 (+) Length   262 a.a.
NCBI ID   WP_014735453.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 335766..346554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS01720 (RJW49_01720) - 336383..337342 (-) 960 WP_074393391.1 asparaginase -
  RJW49_RS01725 (RJW49_01725) - 337412..338777 (+) 1366 Protein_302 Cof-type HAD-IIB family hydrolase -
  RJW49_RS01730 (RJW49_01730) - 338793..339245 (-) 453 WP_004195772.1 universal stress protein -
  RJW49_RS01735 (RJW49_01735) - 339400..340614 (+) 1215 WP_014735452.1 pyridoxal phosphate-dependent aminotransferase -
  RJW49_RS01740 (RJW49_01740) codY 340766..341554 (+) 789 WP_014735453.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJW49_RS01745 (RJW49_01745) - 341567..342097 (+) 531 WP_029694707.1 cysteine hydrolase family protein -
  RJW49_RS01750 (RJW49_01750) rplS 342587..342934 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  RJW49_RS01755 (RJW49_01755) - 343120..343794 (+) 675 WP_012774968.1 hydrolase -
  RJW49_RS01760 (RJW49_01760) gatC 344011..344313 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RJW49_RS01765 (RJW49_01765) gatA 344313..345779 (+) 1467 WP_311048075.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29280.32 Da        Isoelectric Point: 4.6190

>NTDB_id=803884 RJW49_RS01740 WP_014735453.1 340766..341554(+) (codY) [Streptococcus suis strain NLS40]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVSLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=803884 RJW49_RS01740 WP_014735453.1 340766..341554(+) (codY) [Streptococcus suis strain NLS40]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGGTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAGCTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGATGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489