Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RJW55_RS10970 Genome accession   NZ_CP134473
Coordinates   2309427..2310707 (+) Length   426 a.a.
NCBI ID   WP_044760361.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304427..2315707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS10940 (RJW55_10940) - 2304525..2305787 (-) 1263 WP_043026500.1 hypothetical protein -
  RJW55_RS10945 (RJW55_10945) - 2305801..2306547 (-) 747 WP_172073154.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RJW55_RS10950 (RJW55_10950) prmA 2306549..2307502 (-) 954 WP_044760364.1 50S ribosomal protein L11 methyltransferase -
  RJW55_RS10955 (RJW55_10955) - 2307534..2308433 (-) 900 WP_024415727.1 GIY-YIG nuclease family protein -
  RJW55_RS10960 (RJW55_10960) - 2308446..2308916 (-) 471 WP_172073155.1 DUF3013 family protein -
  RJW55_RS10965 (RJW55_10965) - 2309028..2309357 (-) 330 WP_044760362.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  RJW55_RS10970 (RJW55_10970) rarA 2309427..2310707 (+) 1281 WP_044760361.1 replication-associated recombination protein A Machinery gene
  RJW55_RS10985 (RJW55_10985) nrdG 2311148..2311720 (-) 573 WP_024415723.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RJW55_RS10990 (RJW55_10990) - 2311735..2312226 (-) 492 WP_029942807.1 GNAT family N-acetyltransferase -
  RJW55_RS10995 (RJW55_10995) - 2312228..2312434 (-) 207 WP_029185747.1 5'-nucleotidase C-terminal domain-containing protein -
  RJW55_RS11000 (RJW55_11000) - 2312585..2312719 (-) 135 WP_002939130.1 hypothetical protein -
  RJW55_RS11005 (RJW55_11005) nrdD 2312811..2314982 (-) 2172 WP_044760360.1 anaerobic ribonucleoside-triphosphate reductase -
  RJW55_RS11010 (RJW55_11010) - 2315126..2315299 (-) 174 WP_002941962.1 hypothetical protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 46976.62 Da        Isoelectric Point: 6.4385

>NTDB_id=803853 RJW55_RS10970 WP_044760361.1 2309427..2310707(+) (rarA) [Streptococcus suis strain TMW_SS028]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESEGGRHIDLDAVENSLQKSYISMDKNGDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVV
DLALSPKSNSAYLAMDAAIADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTAN
DTGKYERALGMTQEKIKQLKQNKKKS

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=803853 RJW55_RS10970 WP_044760361.1 2309427..2310707(+) (rarA) [Streptococcus suis strain TMW_SS028]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAGCACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATCGCCTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGCGGTCTGGTTCTCATGCTCGATGAGATTCATCGCCTCAACAAGACCAA
GCAGGACTTCCTACTCCCTCTTTTGGAAAACGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCAGCCTTTGCAAACCAGCCATATCCGACAGGCCTTGGAA
CTAGCTCTGACAGACAGCGAACGCGGTTTTGACTTCCCTGTCACCATTGAGCCTGAGGCTCTGGATTTTCTAGCAAATGC
GACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTGGAACTGGCTGTACTTTCTACCAAGGAAAGCGAGGGCGGACGCC
ATATCGACTTGGACGCTGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTATGAC
ATTCTCTCTGCCCTACAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGAGGC
CGAAGACCTACCTAGCCTGGCTCGTCGCTTAACCGTTATTGCCTACGAAGACATAGGCTTGGCCAATCCAGAGGCTCAGA
TTCATACGGTGACTGCACTTGAAGCGGCCCAGAAAATCGGCTTTCCAGAGGCACGGATTTTGATTGCCAACGTGGTCGTT
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTATAGCTGATTTGCGGAAAAACGGTCA
TCTGCCTATTCCAAATCACCTGCGGGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCCATTGGTTACCAGTATC
CCCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTGGCTGCGGACTACTTCACTGCCAAT
GACACCGGCAAATATGAGCGTGCCTTGGGTATGACCCAAGAAAAAATCAAGCAGCTAAAACAAAACAAGAAAAAAAGTTG
A

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

98.122

0.582