Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJW55_RS02055 Genome accession   NZ_CP134473
Coordinates   425098..425886 (+) Length   262 a.a.
NCBI ID   WP_004195776.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 420098..430886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS02035 (RJW55_02035) - 420397..421356 (-) 960 WP_024394819.1 asparaginase -
  RJW55_RS02040 (RJW55_02040) - 421426..422791 (+) 1366 Protein_365 Cof-type HAD-IIB family hydrolase -
  RJW55_RS02045 (RJW55_02045) - 422807..423259 (-) 453 WP_043025266.1 universal stress protein -
  RJW55_RS02050 (RJW55_02050) - 423414..424628 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  RJW55_RS02055 (RJW55_02055) codY 425098..425886 (+) 789 WP_004195776.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJW55_RS02060 (RJW55_02060) - 425888..426439 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  RJW55_RS02065 (RJW55_02065) - 426721..427912 (+) 1192 Protein_370 IS110 family transposase -
  RJW55_RS02070 (RJW55_02070) - 428460..429119 (-) 660 WP_043027276.1 trimeric intracellular cation channel family protein -
  RJW55_RS02075 (RJW55_02075) - 429352..430320 (+) 969 WP_013730549.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29333.38 Da        Isoelectric Point: 4.6797

>NTDB_id=803785 RJW55_RS02055 WP_004195776.1 425098..425886(+) (codY) [Streptococcus suis strain TMW_SS028]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNNEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=803785 RJW55_RS02055 WP_004195776.1 425098..425886(+) (codY) [Streptococcus suis strain TMW_SS028]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCACTTATTATTTGGC
GGAATAATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCAGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496