Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   RJW55_RS01260 Genome accession   NZ_CP134473
Coordinates   247322..249655 (+) Length   777 a.a.
NCBI ID   WP_043027046.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242322..254655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS01240 (RJW55_01240) treP 243310..245304 (-) 1995 WP_043027047.1 PTS system trehalose-specific EIIBC component -
  RJW55_RS01245 (RJW55_01245) treR 245539..246252 (+) 714 WP_024380213.1 trehalose operon repressor Regulator
  RJW55_RS01250 (RJW55_01250) - 246310..246621 (+) 312 WP_024406827.1 hypothetical protein -
  RJW55_RS01255 (RJW55_01255) - 246618..247166 (+) 549 WP_029175774.1 CvpA family protein -
  RJW55_RS01260 (RJW55_01260) mutS/mutS2 247322..249655 (+) 2334 WP_043027046.1 endonuclease MutS2 Machinery gene
  RJW55_RS01265 (RJW55_01265) - 249679..250332 (+) 654 WP_043027045.1 GNAT family N-acetyltransferase -
  RJW55_RS01270 (RJW55_01270) trxA 250856..251170 (+) 315 WP_043027044.1 thioredoxin -
  RJW55_RS01275 (RJW55_01275) - 251309..252838 (+) 1530 WP_043027043.1 AMP-binding protein -
  RJW55_RS01280 (RJW55_01280) msrB 252878..253816 (+) 939 WP_043027042.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87586.25 Da        Isoelectric Point: 6.4374

>NTDB_id=803783 RJW55_RS01260 WP_043027046.1 247322..249655(+) (mutS/mutS2) [Streptococcus suis strain TMW_SS028]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSMSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGIIRNNAWVIGHLDFIRAKHLFARDYKAVVPTISEKQDIALLNVRHPLIADPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=803783 RJW55_RS01260 WP_043027046.1 247322..249655(+) (mutS/mutS2) [Streptococcus suis strain TMW_SS028]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTGCGACAGTTGGAGCCTATGGTGGAAGTCCACCGTATCCAACAGGCCTTTGACGAGTTGACAGATATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGCATGTCTGCTACGAGTGACATTGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCTATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATCCGCCGGAAAATCCGTGAA
GCTGAAGACCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGGGACATGCTGTCCGATAGCATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCTGGGGTTGTCCATGACATTTCAGCTT
CGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGAATTTTGCAGGAACTGTCGGATATGTTGCGACCACATAGCGGCATCATTCGCAATAATGCTTGGGT
CATTGGGCATTTGGATTTCATCCGCGCCAAACACCTCTTTGCACGAGACTACAAGGCCGTAGTTCCGACTATTTCGGAGA
AGCAGGATATTGCCCTTCTCAACGTTCGGCATCCGCTCATTGCTGATCCTGTGCCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTCAAGACCTTGGGATTGACCCATCTGAT
GGCTCAGTCTGGTTTGCCTATTTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGGG
ACGAACAGTCGATTGAGCAGAGTTTATCAACCTTTTCCAGTCACATGACCCACACGGTGCAGATTTTAGCGGAGGCAGAT
CAAGATTCCCTCATTCTCTTTGACGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCCTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCAACTACCCACTATCCGGAGCTCAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATACCAATAGTCTACGACCAACTTATAAATTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCCCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAACGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGGGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCCAGTCTTAAGCCCCACCAGATTATTGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACGGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCTCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GACCAAGCCCTGCTCAATAACCTAGCCCAAGTCGATATTGTCCATGGTATAGGTACAGGGGTTATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-504)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.025

100

0.408