Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U10_RS06680 Genome accession   NZ_CP120147
Coordinates   1313092..1315482 (+) Length   796 a.a.
NCBI ID   WP_323708453.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain Dog030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1308092..1320482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U10_RS06660 (P3U10_06655) sal(A) 1308399..1310024 (+) 1626 WP_135016677.1 ABC-F type ribosomal protection protein Sal(A) -
  P3U10_RS06665 (P3U10_06660) - 1310084..1311232 (+) 1149 WP_135016679.1 cysteine desulfurase family protein -
  P3U10_RS06670 (P3U10_06665) mnmA 1311225..1312334 (+) 1110 WP_135016681.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U10_RS06675 (P3U10_06670) - 1312421..1313089 (+) 669 WP_135016683.1 tetratricopeptide repeat protein -
  P3U10_RS06680 (P3U10_06675) recD2 1313092..1315482 (+) 2391 WP_323708453.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U10_RS06685 (P3U10_06680) alaS 1315731..1318361 (+) 2631 WP_323705686.1 alanine--tRNA ligase -
  P3U10_RS06690 (P3U10_06685) - 1318429..1318698 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  P3U10_RS06695 (P3U10_06690) ruvX 1318691..1319119 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  P3U10_RS06700 (P3U10_06695) - 1319139..1319444 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90467.64 Da        Isoelectric Point: 4.5970

>NTDB_id=803742 P3U10_RS06680 WP_323708453.1 1313092..1315482(+) (recD2) [Mammaliicoccus sciuri strain Dog030]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIEHIM
IKLNELGFGPKLAMAIYQYYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILTNGAYELLNHNQPEVVNKDQINVVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVVPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDMKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=803742 P3U10_RS06680 WP_323708453.1 1313092..1315482(+) (recD2) [Mammaliicoccus sciuri strain Dog030]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACTTTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTTAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACATATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATATTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCAGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGACCAATGGGGCATATGAATTGTTAAATCATAATCAACCCGAAGTTGTGAATAA
AGATCAGATTAATGTTGTCATTATAGAGATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGGCTTTATCAACATCAAGATGAACTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACACGGTGTGAGTTTAAATTATGATGATTACCAAGAAGGAACGGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCCAAAAGACTAAGTGAATCAACTGGACTAGAAGCGATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCTGATGATGTGTTAGATAATGACATACATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTGATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCTCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGGTACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGCTCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCTTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTACAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATATACCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATATACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATATGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.502

100

0.5