Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RJW56_RS03640 Genome accession   NZ_CP134472
Coordinates   738515..740284 (+) Length   589 a.a.
NCBI ID   WP_024394364.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 733515..745284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS03610 (RJW56_03610) - 734326..735081 (+) 756 WP_024394362.1 class I SAM-dependent methyltransferase -
  RJW56_RS03615 (RJW56_03615) pcp 735078..735725 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  RJW56_RS03620 (RJW56_03620) - 735725..736033 (+) 309 WP_024394363.1 DUF4298 domain-containing protein -
  RJW56_RS03625 (RJW56_03625) rpsP 736158..736430 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  RJW56_RS03630 (RJW56_03630) - 736452..736694 (+) 243 WP_012028079.1 KH domain-containing protein -
  RJW56_RS03635 (RJW56_03635) rcrP 736770..738506 (+) 1737 WP_012775079.1 ABC transporter ATP-binding protein Regulator
  RJW56_RS03640 (RJW56_03640) rcrQ 738515..740284 (+) 1770 WP_024394364.1 ABC transporter ATP-binding protein Regulator
  RJW56_RS03645 (RJW56_03645) - 740341..741264 (-) 924 WP_024394365.1 polysaccharide deacetylase family protein -
  RJW56_RS03650 (RJW56_03650) - 741369..742655 (+) 1287 WP_014637977.1 homoserine dehydrogenase -
  RJW56_RS03655 (RJW56_03655) thrB 742659..743519 (+) 861 WP_011922331.1 homoserine kinase -
  RJW56_RS03660 (RJW56_03660) murB 743754..744662 (+) 909 WP_024394366.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65889.82 Da        Isoelectric Point: 5.1568

>NTDB_id=803704 RJW56_RS03640 WP_024394364.1 738515..740284(+) (rcrQ) [Streptococcus suis strain 1522228]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEVAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=803704 RJW56_RS03640 WP_024394364.1 738515..740284(+) (rcrQ) [Streptococcus suis strain 1522228]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTTGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGTTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
GTCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435