Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJW56_RS01800 Genome accession   NZ_CP134472
Coordinates   361675..362463 (+) Length   262 a.a.
NCBI ID   WP_024394817.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 356675..367463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS01780 (RJW56_01780) - 357293..358252 (-) 960 WP_024394819.1 asparaginase -
  RJW56_RS01785 (RJW56_01785) - 358321..359686 (+) 1366 Protein_315 Cof-type HAD-IIB family hydrolase -
  RJW56_RS01790 (RJW56_01790) - 359702..360154 (-) 453 WP_004195772.1 universal stress protein -
  RJW56_RS01795 (RJW56_01795) - 360309..361523 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  RJW56_RS01800 (RJW56_01800) codY 361675..362463 (+) 789 WP_024394817.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJW56_RS01805 (RJW56_01805) - 362465..363016 (+) 552 WP_024394816.1 cysteine hydrolase family protein -
  RJW56_RS01810 (RJW56_01810) rplS 363494..363841 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  RJW56_RS01815 (RJW56_01815) - 364027..364701 (+) 675 WP_012774968.1 hydrolase -
  RJW56_RS01825 (RJW56_01825) gatC 365817..366119 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29364.39 Da        Isoelectric Point: 4.6190

>NTDB_id=803687 RJW56_RS01800 WP_024394817.1 361675..362463(+) (codY) [Streptococcus suis strain 1522228]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVTQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=803687 RJW56_RS01800 WP_024394817.1 361675..362463(+) (codY) [Streptococcus suis strain 1522228]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTTCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTACGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCAAG
ATCGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACGGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496