Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RJ561_RS02840 Genome accession   NZ_CP134393
Coordinates   588593..589768 (-) Length   391 a.a.
NCBI ID   WP_310957956.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003-50-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583593..594768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ561_RS02805 (RJ561_02805) - 583909..584223 (+) 315 WP_000867999.1 hypothetical protein -
  RJ561_RS02810 (RJ561_02810) - 584201..584977 (+) 777 WP_310957952.1 RNA polymerase sigma factor FliA -
  RJ561_RS02815 (RJ561_02815) fliM 584970..586034 (+) 1065 WP_025275746.1 flagellar motor switch protein FliM -
  RJ561_RS02820 (RJ561_02820) fliY 586038..586901 (+) 864 WP_310957954.1 flagellar motor switch protein FliY -
  RJ561_RS02825 (RJ561_02825) - 586930..587466 (+) 537 WP_310957955.1 YhcH/YjgK/YiaL family protein -
  RJ561_RS02830 (RJ561_02830) - 587463..587960 (+) 498 WP_000780279.1 DUF2147 domain-containing protein -
  RJ561_RS02835 (RJ561_02835) fur 587981..588433 (-) 453 WP_024117933.1 ferric iron uptake transcriptional regulator -
  RJ561_RS02840 (RJ561_02840) rarA 588593..589768 (-) 1176 WP_310957956.1 replication-associated recombination protein A Machinery gene
  RJ561_RS02845 (RJ561_02845) - 589765..590136 (-) 372 WP_000332993.1 heat shock protein transcriptional repressor HspR -
  RJ561_RS02850 (RJ561_02850) - 590146..591012 (-) 867 WP_310957957.1 DnaJ C-terminal domain-containing protein -
  RJ561_RS02855 (RJ561_02855) - 591180..592430 (+) 1251 WP_310957958.1 hypothetical protein -
  RJ561_RS02860 (RJ561_02860) - 592536..593402 (-) 867 WP_310958098.1 5'-3' exonuclease -
  RJ561_RS02865 (RJ561_02865) - 593629..594525 (-) 897 WP_000697532.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43835.61 Da        Isoelectric Point: 8.7253

>NTDB_id=803490 RJ561_RS02840 WP_310957956.1 588593..589768(-) (rarA) [Helicobacter pylori strain ICDC15003-50-2]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLNKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLVASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=803490 RJ561_RS02840 WP_310957956.1 588593..589768(-) (rarA) [Helicobacter pylori strain ICDC15003-50-2]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATCTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTGCATGCTAGAGCGCCCTATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAAAAAGAGCGATTTAAACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTACTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGACTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGTCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTATTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394