Detailed information    

insolico Bioinformatically predicted

Overview


Name   recD2   Type   Machinery gene
Locus tag   P3U32_RS05830 Genome accession   NZ_CP120131
Coordinates   1160354..1162726 (+) Length   790 a.a.
NCBI ID   WP_323704673.1    Uniprot ID   -
Organism   Mammaliicoccus sp. Dog046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1143000..1217935 1160354..1162726 within 0


Gene organization within MGE regions


Location: 1143000..1217935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U32_RS05760 (P3U32_05760) dtd 1144669..1145121 (+) 453 WP_323704660.1 D-aminoacyl-tRNA deacylase -
  P3U32_RS05765 (P3U32_05765) - 1145118..1145990 (+) 873 WP_323704661.1 N-acetylmuramoyl-L-alanine amidase -
  P3U32_RS05770 (P3U32_05770) hisS 1146314..1147579 (+) 1266 WP_323704662.1 histidine--tRNA ligase -
  P3U32_RS05775 (P3U32_05775) aspS 1147579..1149351 (+) 1773 WP_323704663.1 aspartate--tRNA ligase -
  P3U32_RS05785 (P3U32_05785) - 1149653..1150420 (+) 768 WP_323704664.1 tRNA threonylcarbamoyladenosine dehydratase -
  P3U32_RS05790 (P3U32_05790) - 1151416..1152687 (-) 1272 WP_323704665.1 replication-associated recombination protein A -
  P3U32_RS05795 (P3U32_05795) cymR 1152778..1153197 (+) 420 WP_323704666.1 cysteine metabolism transcriptional regulator CymR -
  P3U32_RS05800 (P3U32_05800) - 1153351..1154085 (+) 735 WP_323704667.1 serine protease -
  P3U32_RS05805 (P3U32_05805) - 1154334..1155341 (-) 1008 WP_323704668.1 LLM class flavin-dependent oxidoreductase -
  P3U32_RS05810 (P3U32_05810) sal 1155657..1157282 (+) 1626 WP_323704669.1 Sal family ABC-F type ribosomal protection protein -
  P3U32_RS05815 (P3U32_05815) - 1157342..1158490 (+) 1149 WP_323704670.1 cysteine desulfurase family protein -
  P3U32_RS05820 (P3U32_05820) mnmA 1158483..1159592 (+) 1110 WP_323704671.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U32_RS05825 (P3U32_05825) - 1159683..1160351 (+) 669 WP_323704672.1 tetratricopeptide repeat protein -
  P3U32_RS05830 (P3U32_05830) recD2 1160354..1162726 (+) 2373 WP_323704673.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U32_RS05835 (P3U32_05835) alaS 1162975..1165605 (+) 2631 WP_323704674.1 alanine--tRNA ligase -
  P3U32_RS05840 (P3U32_05840) - 1165671..1165940 (+) 270 WP_323704675.1 IreB family regulatory phosphoprotein -
  P3U32_RS05845 (P3U32_05845) ruvX 1165933..1166361 (+) 429 WP_323704676.1 Holliday junction resolvase RuvX -
  P3U32_RS05850 (P3U32_05850) - 1166380..1166685 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -
  P3U32_RS05855 (P3U32_05855) mltG 1166765..1167883 (+) 1119 WP_323704677.1 endolytic transglycosylase MltG -
  P3U32_RS05860 (P3U32_05860) - 1168073..1168714 (+) 642 WP_323704678.1 O-methyltransferase -
  P3U32_RS05865 (P3U32_05865) - 1168714..1169637 (+) 924 WP_323704679.1 peptidase U32 family protein -
  P3U32_RS05870 (P3U32_05870) - 1169659..1170927 (+) 1269 WP_323704680.1 U32 family peptidase -
  P3U32_RS05875 (P3U32_05875) udk 1170927..1171550 (+) 624 WP_323704681.1 uridine kinase -
  P3U32_RS05880 (P3U32_05880) greA 1171580..1172056 (+) 477 WP_323704682.1 transcription elongation factor GreA -
  P3U32_RS05885 (P3U32_05885) pxpB 1172287..1173009 (+) 723 WP_323704683.1 5-oxoprolinase subunit PxpB -
  P3U32_RS05890 (P3U32_05890) - 1173009..1174010 (+) 1002 WP_323704684.1 biotin-dependent carboxyltransferase family protein -
  P3U32_RS05895 (P3U32_05895) - 1174014..1174439 (+) 426 WP_323704685.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  P3U32_RS05900 (P3U32_05900) accC 1174452..1175792 (+) 1341 WP_323704687.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  P3U32_RS05905 (P3U32_05905) pxpA 1175805..1176563 (+) 759 WP_323704688.1 5-oxoprolinase subunit PxpA -
  P3U32_RS05910 (P3U32_05910) - 1176578..1177816 (+) 1239 WP_323704689.1 NRAMP family divalent metal transporter -
  P3U32_RS05915 (P3U32_05915) - 1177884..1178573 (+) 690 WP_323704690.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  P3U32_RS05920 (P3U32_05920) - 1178805..1179329 (+) 525 WP_323704691.1 YqeG family HAD IIIA-type phosphatase -
  P3U32_RS05925 (P3U32_05925) yqeH 1179332..1180432 (+) 1101 WP_323704692.1 ribosome biogenesis GTPase YqeH -
  P3U32_RS05930 (P3U32_05930) aroE 1180445..1181254 (+) 810 WP_323704693.1 shikimate dehydrogenase -
  P3U32_RS05935 (P3U32_05935) yhbY 1181257..1181547 (+) 291 WP_323704694.1 ribosome assembly RNA-binding protein YhbY -
  P3U32_RS05940 (P3U32_05940) nadD 1181551..1182123 (+) 573 WP_323704695.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  P3U32_RS05945 (P3U32_05945) yqeK 1182113..1182685 (+) 573 WP_323704696.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  P3U32_RS05950 (P3U32_05950) rsfS 1182698..1183051 (+) 354 WP_323704697.1 ribosome silencing factor -
  P3U32_RS05955 (P3U32_05955) - 1183051..1183767 (+) 717 WP_323704698.1 class I SAM-dependent methyltransferase -
  P3U32_RS05965 (P3U32_05965) - 1185090..1185746 (+) 657 WP_323704699.1 helix-hairpin-helix domain-containing protein -
  P3U32_RS05970 (P3U32_05970) - 1185808..1186263 (+) 456 WP_323704700.1 ComE operon protein 2 -
  P3U32_RS05975 (P3U32_05975) - 1186402..1188591 (+) 2190 WP_323704701.1 DNA internalization-related competence protein ComEC/Rec2 -
  P3U32_RS05980 (P3U32_05980) - 1188636..1188773 (-) 138 WP_323704702.1 YqzM family protein -
  P3U32_RS05985 (P3U32_05985) holA 1188865..1189839 (+) 975 WP_323704703.1 DNA polymerase III subunit delta -
  P3U32_RS05990 (P3U32_05990) rpsT 1189882..1190133 (-) 252 WP_323704704.1 30S ribosomal protein S20 -
  P3U32_RS05995 (P3U32_05995) lepA 1190368..1192191 (+) 1824 WP_323704705.1 translation elongation factor 4 -
  P3U32_RS06000 (P3U32_06000) hemW 1192255..1193373 (+) 1119 WP_323704707.1 radical SAM family heme chaperone HemW -
  P3U32_RS06005 (P3U32_06005) hrcA 1193480..1194454 (+) 975 WP_323704708.1 heat-inducible transcriptional repressor HrcA -
  P3U32_RS06010 (P3U32_06010) grpE 1194482..1195075 (+) 594 WP_323704709.1 nucleotide exchange factor GrpE -
  P3U32_RS06015 (P3U32_06015) dnaK 1195121..1196956 (+) 1836 WP_323704710.1 molecular chaperone DnaK -
  P3U32_RS06020 (P3U32_06020) dnaJ 1197050..1198183 (+) 1134 WP_323704711.1 molecular chaperone DnaJ -
  P3U32_RS06025 (P3U32_06025) prmA 1198187..1199113 (+) 927 WP_323704712.1 50S ribosomal protein L11 methyltransferase -
  P3U32_RS06030 (P3U32_06030) - 1199122..1199871 (+) 750 WP_323704846.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  P3U32_RS06035 (P3U32_06035) mtaB 1199878..1201224 (+) 1347 WP_323704713.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB -
  P3U32_RS06040 (P3U32_06040) rpsU 1201351..1201527 (+) 177 WP_016998564.1 30S ribosomal protein S21 -
  P3U32_RS06045 (P3U32_06045) - 1201782..1202453 (+) 672 WP_416361244.1 NfeD family protein -
  P3U32_RS06050 (P3U32_06050) floA 1202477..1203472 (+) 996 WP_323704715.1 flotillin-like protein FloA -
  P3U32_RS06055 (P3U32_06055) - 1203488..1204192 (+) 705 WP_323704716.1 hypothetical protein -
  P3U32_RS06060 (P3U32_06060) - 1204453..1205868 (-) 1416 WP_323704717.1 alkaline phosphatase -
  P3U32_RS06065 (P3U32_06065) - 1206083..1206583 (+) 501 WP_323704718.1 PH domain-containing protein -
  P3U32_RS06070 (P3U32_06070) - 1206619..1207566 (+) 948 WP_323704719.1 PhoH family protein -
  P3U32_RS06075 (P3U32_06075) ybeY 1207568..1208029 (+) 462 WP_323704720.1 rRNA maturation RNase YbeY -
  P3U32_RS06080 (P3U32_06080) - 1208022..1208378 (+) 357 WP_416361237.1 diacylglycerol kinase family protein -
  P3U32_RS06085 (P3U32_06085) cdd 1208391..1208795 (+) 405 WP_323704721.1 cytidine deaminase -
  P3U32_RS06090 (P3U32_06090) era 1208796..1209695 (+) 900 WP_323704722.1 GTPase Era -
  P3U32_RS06095 (P3U32_06095) recO 1209717..1210469 (+) 753 WP_323704723.1 DNA repair protein RecO -
  P3U32_RS06100 (P3U32_06100) - 1210512..1211900 (-) 1389 WP_323704724.1 glycine--tRNA ligase -
  P3U32_RS06105 (P3U32_06105) - 1212197..1212832 (+) 636 WP_323704725.1 helix-turn-helix transcriptional regulator -
  P3U32_RS06110 (P3U32_06110) - 1212845..1213660 (+) 816 WP_323704726.1 pyruvate, water dikinase regulatory protein -
  P3U32_RS06115 (P3U32_06115) dnaG 1213672..1215444 (+) 1773 WP_323704727.1 DNA primase -
  P3U32_RS06120 (P3U32_06120) rpoD 1215471..1216577 (+) 1107 WP_323704728.1 RNA polymerase sigma factor RpoD -
  P3U32_RS06125 (P3U32_06125) - 1216680..1217033 (+) 354 WP_323704729.1 cytochrome c -
  P3U32_RS06130 (P3U32_06130) - 1217088..1217756 (+) 669 WP_323704730.1 tRNA (adenine(22)-N(1))-methyltransferase -

Sequence


Protein


Download         Length: 790 a.a.        Molecular weight: 89963.15 Da        Isoelectric Point: 4.6482

>NTDB_id=803387 P3U32_RS05830 WP_323704673.1 1160354..1162726(+) (recD2) [Mammaliicoccus sp. Dog046]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMESNEDFDQEVTIVGYLPQIVEGETYLFKGKVINHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAESIVEILGENALKKIIEDPDVLKQIPKLNQQKRETIAESIRENQVIEQIM
IKLNELGFGPKLAMSIYQVYKEETLNVLKQTPYRLVMDVNGIGFQRADQIAEQVGISKDHHDRFVAGISYYLNQQSLQNG
HTYLPVDILVNGVYELLNHQQPNVVNKDQINDVIIEMSEEQAIIIEDQHCFLPSLYYSEAKSVQIIHRLYQHQDELKDIE
TSDLQLHIGQIEDMNDVSYADGQKHALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYDENSDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNEINAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSISEKHHDRSFISCTSHQIASVVERVVQGA
VSKGYNMQDIQVLAPIYRGPAGINKLNQLLQDILNPKDEDMRYLEYGDIEYRENDKVLQLVNRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVKQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHGRMTSFDTKLKMYFQTDDQVEPEKERHLILTEENMYEIDPMINMQDKTPYDFMK

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=803387 P3U32_RS05830 WP_323704673.1 1160354..1162726(+) (recD2) [Mammaliicoccus sp. Dog046]
ATGGAAAATTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTGATTAGAATCTTATTCCAAAATAGTGATAACTA
TTATACTGTGATTAAAGTTGATGTGATGGAATCAAATGAAGATTTTGACCAAGAGGTTACCATTGTTGGTTATCTGCCGC
AAATTGTTGAAGGTGAAACGTATTTGTTTAAAGGTAAAGTCATTAATCATCCGAAATACGGAAAACAACTGCAAGCAGAA
ACGTTTGAGAAAGAATTACCACAAACAAAGCAAGGCGTTATCCATTACTTATCAAGTGATTTATTTAAGGGAATTGGTAA
GAAAACGGCAGAATCGATCGTTGAAATTTTAGGAGAAAATGCACTTAAGAAGATTATAGAAGATCCAGATGTACTTAAAC
AAATTCCTAAACTCAATCAACAAAAGAGAGAAACAATCGCTGAATCAATCCGTGAGAATCAAGTGATTGAACAAATAATG
ATTAAATTGAATGAACTTGGTTTTGGTCCAAAACTTGCGATGTCAATTTACCAAGTATATAAAGAAGAAACTCTAAATGT
ACTGAAACAAACACCATATCGATTAGTAATGGATGTTAATGGCATAGGATTTCAAAGAGCAGACCAAATTGCTGAACAAG
TAGGGATTTCGAAAGATCATCATGATCGTTTTGTCGCAGGAATTAGTTATTATTTAAATCAACAATCATTACAGAACGGA
CATACATATTTGCCAGTAGATATTTTAGTGAATGGCGTATATGAACTGTTGAATCATCAACAGCCAAATGTGGTGAATAA
AGATCAAATTAACGATGTAATCATTGAGATGAGTGAGGAACAAGCAATTATTATTGAAGATCAACATTGCTTCTTACCTT
CTTTATATTACTCAGAAGCAAAAAGTGTTCAAATTATCCATCGATTATATCAACATCAAGATGAATTAAAAGATATAGAA
ACAAGCGATTTACAACTTCATATTGGACAAATTGAAGATATGAATGATGTTTCGTATGCTGATGGACAAAAACATGCTTT
GGAAACAGCCATTAACAATAAAATGATGTTGTTAACGGGTGGACCTGGTACAGGTAAAACAACAGTAATAAGAGGGATAT
GTGAATTATATTCTGAAATCCATGGTGTGAGCTTAAATTATGATGATTATGACGAGAATTCAGATTTTCCAATCGTTTTA
GCAGCACCTACAGGAAGAGCAGCGAAAAGGTTGAGCGAATCTACTGGTTTGGAAGCAATGACCATTCATAGATTAATCGG
ATGGAGTAAAGATACTCAGCCTGATGATGTATTAGATAATGAAATTAATGCACATTTAATAATCTTGGATGAAATGTCCA
TGGTAGATACTTGGTTGATGTATCAATTTTTAAGAGCAGTGCCTGATTATGCACAAATTATCTTTGTTGGTGATGAAGAC
CAATTGCCTTCAGTTGGACCAGGACAAATTTTTAAAGATTTGATCGATTCAAAAGTTATTCCAAGAGTCAATTTAACTGA
AGTATATAGACAACAAGAAGGCTCATCTATTATTGATTTAGCCCATAAAATAAAAAATGGATTACCTGTGTCAATTAGTG
AAAAACATCATGATCGATCCTTTATAAGCTGTACGAGTCATCAAATTGCATCTGTAGTAGAAAGAGTCGTTCAAGGTGCT
GTAAGTAAGGGATACAATATGCAAGATATTCAAGTATTAGCACCTATTTATCGAGGACCAGCGGGTATAAATAAACTCAA
CCAGCTACTGCAAGATATTCTCAATCCTAAAGATGAAGATATGCGTTACTTAGAATACGGCGATATTGAATACCGAGAAA
ATGACAAAGTACTACAGCTGGTTAATCGACCAGATGATAATGTTTTTAATGGTGATATAGGTGTCGTTACAGGTGTGTAT
AAAGCAGAAGAGAACGCATTAGGTAAAGATGTCGTCATCGTTGATTATGAGGGCAATGATATTACGTATACAAAACAAGA
TTTATCAGAAATTACACACGCGTATTGTTGTTCGATTCATAAATCACAAGGTTCTGAATTTCCAATTGTCATTATGCCGA
TAGTTAAGCAATATTTTAGAATGTTGCAGAAAAACATATTATATACTGGATTAACACGAGCGAAACAATCATTAGTCGTG
TGTGGTGAAGAACAGGCATTTAATCAAGGAATACAAACACTTGGACATGGTCGTATGACTTCTTTTGATACAAAATTGAA
AATGTACTTTCAAACGGACGATCAAGTTGAGCCTGAAAAGGAACGTCATCTCATCCTTACAGAAGAAAATATGTATGAGA
TTGATCCTATGATCAATATGCAAGATAAAACACCGTATGATTTTATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

100

0.505