Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3U62_RS05710 Genome accession   NZ_CP120130
Coordinates   1160343..1162721 (+) Length   792 a.a.
NCBI ID   WP_016910820.1    Uniprot ID   A0A2T4PV43
Organism   Mammaliicoccus vitulinus strain Dog047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155343..1167721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U62_RS05690 (P3U62_05690) sal 1155652..1157277 (+) 1626 WP_323707248.1 Sal family ABC-F type ribosomal protection protein -
  P3U62_RS05695 (P3U62_05695) - 1157337..1158485 (+) 1149 WP_204197577.1 cysteine desulfurase family protein -
  P3U62_RS05700 (P3U62_05700) mnmA 1158478..1159587 (+) 1110 WP_016910818.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3U62_RS05705 (P3U62_05705) - 1159672..1160340 (+) 669 WP_016910819.1 tetratricopeptide repeat protein -
  P3U62_RS05710 (P3U62_05710) recD2 1160343..1162721 (+) 2379 WP_016910820.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3U62_RS05715 (P3U62_05715) alaS 1162972..1165602 (+) 2631 WP_323707249.1 alanine--tRNA ligase -
  P3U62_RS05720 (P3U62_05720) - 1165670..1165939 (+) 270 WP_103323211.1 IreB family regulatory phosphoprotein -
  P3U62_RS05725 (P3U62_05725) ruvX 1165932..1166360 (+) 429 WP_323707250.1 Holliday junction resolvase RuvX -
  P3U62_RS05730 (P3U62_05730) - 1166379..1166684 (+) 306 WP_016910824.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 89927.31 Da        Isoelectric Point: 4.7290

>NTDB_id=803355 P3U62_RS05710 WP_016910820.1 1160343..1162721(+) (recD2) [Mammaliicoccus vitulinus strain Dog047]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVINHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALKKIIEEPEVLKEIPKLNKQKRDTIAAAIRENQAIERIM
IKLNELGFGPKLAMSIYQVYKEETLNIIKQTPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGISYFLDQQSLQNG
HTFLPVDILINGAYELLNHNQPEVVNKDQLNSVILEMSEENKLIIEDNNCFLPSLYYSEAKSVQIIHRLYQHQEELKDIE
KSDLQLHIGEIEDMNDVSYADGQKLALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDHAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLKEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDETTRYLEYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVI
CGEENAFNQGIQTLGHGRMTSFDTKLKTYFQTDTENTNEPSEMKNLILTEDNMYEIDPMINMKDKTPYDFMK

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=803355 P3U62_RS05710 WP_016910820.1 1160343..1162721(+) (recD2) [Mammaliicoccus vitulinus strain Dog047]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATCTTATTTCAAAATAGTGATAACTA
TTATACCGTTATAAAAGTTGATGTGATGGACTCAAATGAAGATTTCGATCAAGAAGTCACAATTGTTGGTTATCTTCCTC
AAATAGTAGAAGGCGAAACATATCTTTTTAAAGGTAAAGTAATTAATCATCCAAAGTATGGTAAGCAATTACAAGCTGAA
ACATTCGAAAAAGAACTGCCACAAACTAAACAAGGCGTTATTCATTATTTATCTAGTGATTTATTTAAAGGTATAGGAAA
GAAAACTGCAGAAACAATTGTTGATAAATTAGGCGAAGACGCACTTAAAAAAATAATTGAAGAGCCAGAAGTATTGAAAG
AAATACCTAAATTAAACAAACAAAAACGAGATACGATTGCAGCAGCTATACGTGAGAATCAAGCTATAGAACGCATCATG
ATTAAACTGAATGAACTTGGTTTTGGACCGAAACTTGCTATGTCTATATATCAAGTTTATAAGGAAGAAACGCTTAATAT
TATTAAACAAACACCCTATCGATTAGTTATGGATATTAACGGTATTGGCTTCCAAAGAGCCGACCAAATTGCCGAACAAG
TAGGTATTTCAAAAGACCATCATGATCGACTTGTCGCTGGAATTAGCTATTTCTTAGATCAACAATCTTTACAAAATGGT
CATACATTTTTGCCTGTTGATATATTAATTAATGGTGCATATGAATTGTTAAATCATAATCAACCAGAAGTCGTGAATAA
AGATCAGCTGAACAGTGTTATTTTAGAGATGAGTGAAGAAAACAAATTAATAATTGAAGATAATAATTGTTTTTTACCTT
CTCTATATTATTCTGAAGCTAAAAGCGTTCAAATTATCCATCGTCTTTATCAACATCAAGAAGAACTTAAAGATATTGAA
AAAAGTGATTTGCAATTACACATTGGTGAAATTGAAGATATGAATGACGTGTCATATGCTGATGGTCAAAAATTAGCATT
AGAAACAGCGATAAACAACAAGATGATGCTACTAACAGGTGGACCTGGTACTGGTAAGACGACAGTTATAAGAGGGATTT
GTGAATTGTATTCTGAAATTCATGGTGTCAGTTTAAATTATGATGATTACCAAGAAGGTACTGACTTTCCTATCGTATTA
GCTGCACCTACAGGACGTGCAGCAAAACGACTGAGTGAATCAACAGGTTTAGAAGCTATGACCATTCATAGGCTAATAGG
TTGGAGCAAAGATACACAACCGGATGATGTGCTTGATAATGATATACATGCGCATTTAATTATTTTAGATGAAATGTCCA
TGGTAGATACTTGGTTAATGTACCAGTTTCTACGTGCGGTGCCAGATCATGCTCAAATAATCTTTGTAGGTGACGAAGAT
CAGTTACCTTCAGTTGGACCAGGACAGATTTTCAAAGATTTGATTGATTCTAAAGTGATACCTAGAGTTAATTTAAAAGA
AGTTTATAGACAGCAAGAAGGTTCTTCAATTATTGATTTAGCGCACAAAATAAAAAATGGTTTACCAGTATCTATTAATG
AAAAACATCATGATCGATCCTTTATTCCGTGTAGTAGTAATCAAATTGCAACAGTAGTTGAAAAAGTTGTCCAAGGTGCA
GTAAATAAAGGTTATAACATGCAAGATATACAAGTGTTAGCCCCAATTTATCGCGGCCCTGCAGGTATTAATAAACTGAA
TGAGTTATTACAAGATATTTTGAACCCGAAAGATGAAACAACTCGCTATCTTGAATATGGAGATATCGAATATAGAGAAA
ATGATAAAGTGTTACAGCTCATAAATCGACCAGACGATAATGTGTTTAATGGTGATATTGGCGTTGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCGTTAGGTAAAGATGTAGTCATTGTAGACTATGAAGGAAATGATATTACTTATACGAAACAAGA
TTTATCAGAAATAACACATGCTTATTGTTGTTCCATACACAAATCGCAAGGTTCTGAGTTTCCAATTGTAATCATGCCTA
TAGTTAGACAATACTTTAGAATGTTACAGAAGAACATTTTGTATACAGGACTAACCCGAGCTAAACAATCATTGGTCATT
TGCGGAGAAGAGAATGCTTTTAATCAAGGTATACAAACGTTAGGGCATGGACGAATGACGTCATTTGATACTAAATTAAA
AACATATTTTCAAACGGATACTGAAAATACAAACGAACCTAGTGAAATGAAAAACTTAATTTTAACAGAAGATAATATGT
ATGAAATTGATCCGATGATTAACATGAAAGATAAAACACCTTATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PV43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.686

100

0.5