Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RJ645_RS02120 Genome accession   NZ_CP134366
Coordinates   469023..469490 (-) Length   155 a.a.
NCBI ID   WP_022646190.1    Uniprot ID   -
Organism   Escherichia coli strain TUM12368     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464023..474490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ645_RS02095 (RJ645_02095) rpsG 464164..464634 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RJ645_RS02100 (RJ645_02100) fusA 464731..466845 (+) 2115 WP_000124700.1 elongation factor G -
  RJ645_RS02105 (RJ645_02105) tuf 466916..468100 (+) 1185 WP_000031783.1 elongation factor Tu -
  RJ645_RS02110 (RJ645_02110) bfd 468283..468477 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RJ645_RS02115 (RJ645_02115) bfr 468550..469026 (+) 477 WP_000675515.1 bacterioferritin -
  RJ645_RS02120 (RJ645_02120) pilD 469023..469490 (-) 468 WP_022646190.1 A24 family peptidase Machinery gene
  RJ645_RS02125 (RJ645_02125) rpsJ 469869..470180 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RJ645_RS02130 (RJ645_02130) rplC 470213..470842 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RJ645_RS02135 (RJ645_02135) rplD 470853..471458 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RJ645_RS02140 (RJ645_02140) rplW 471455..471757 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RJ645_RS02145 (RJ645_02145) rplB 471775..472596 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RJ645_RS02150 (RJ645_02150) rpsS 472613..472891 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RJ645_RS02155 (RJ645_02155) rplV 472906..473238 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RJ645_RS02160 (RJ645_02160) rpsC 473256..473957 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RJ645_RS02165 (RJ645_02165) rplP 473970..474380 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=802985 RJ645_RS02120 WP_022646190.1 469023..469490(-) (pilD) [Escherichia coli strain TUM12368]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLATAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=802985 RJ645_RS02120 WP_022646190.1 469023..469490(-) (pilD) [Escherichia coli strain TUM12368]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATTCTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGACTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368