Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RJ646_RS02185 Genome accession   NZ_CP134358
Coordinates   471139..471606 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain TUM13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466139..476606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ646_RS02160 (RJ646_02160) rpsG 466280..466750 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RJ646_RS02165 (RJ646_02165) fusA 466847..468961 (+) 2115 WP_000124700.1 elongation factor G -
  RJ646_RS02170 (RJ646_02170) tuf 469032..470216 (+) 1185 WP_000031783.1 elongation factor Tu -
  RJ646_RS02175 (RJ646_02175) bfd 470399..470593 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RJ646_RS02180 (RJ646_02180) bfr 470666..471142 (+) 477 WP_000675526.1 bacterioferritin -
  RJ646_RS02185 (RJ646_02185) pilD 471139..471606 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  RJ646_RS02190 (RJ646_02190) rpsJ 471985..472296 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RJ646_RS02195 (RJ646_02195) rplC 472329..472958 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RJ646_RS02200 (RJ646_02200) rplD 472969..473574 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RJ646_RS02205 (RJ646_02205) rplW 473571..473873 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RJ646_RS02210 (RJ646_02210) rplB 473891..474712 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RJ646_RS02215 (RJ646_02215) rpsS 474729..475007 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RJ646_RS02220 (RJ646_02220) rplV 475022..475354 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RJ646_RS02225 (RJ646_02225) rpsC 475372..476073 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RJ646_RS02230 (RJ646_02230) rplP 476086..476496 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=802818 RJ646_RS02185 WP_000381746.1 471139..471606(-) (pilD) [Escherichia coli strain TUM13936]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=802818 RJ646_RS02185 WP_000381746.1 471139..471606(-) (pilD) [Escherichia coli strain TUM13936]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387