Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RG879_RS09855 Genome accession   NZ_CP134202
Coordinates   1939648..1940916 (+) Length   422 a.a.
NCBI ID   WP_000774765.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain Alim_agalac_1000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934648..1945916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG879_RS09810 - 1934716..1935081 (-) 366 WP_228776375.1 MepB family protein -
  RG879_RS09815 - 1935298..1936014 (+) 717 WP_000859570.1 MerR family transcriptional regulator -
  RG879_RS09820 - 1936053..1936523 (-) 471 WP_000631754.1 GNAT family N-acetyltransferase -
  RG879_RS09825 - 1936495..1936953 (-) 459 WP_000376720.1 NUDIX hydrolase -
  RG879_RS09830 - 1936946..1937254 (-) 309 WP_001868493.1 hypothetical protein -
  RG879_RS09835 - 1937297..1937767 (-) 471 WP_001051338.1 DUF3013 family protein -
  RG879_RS09840 - 1937841..1938368 (-) 528 WP_001031199.1 DUF3278 domain-containing protein -
  RG879_RS09845 - 1938371..1938559 (-) 189 WP_001082462.1 helix-turn-helix transcriptional regulator -
  RG879_RS09850 - 1939164..1939655 (+) 492 WP_000586892.1 GNAT family N-acetyltransferase -
  RG879_RS09855 rarA 1939648..1940916 (+) 1269 WP_000774765.1 replication-associated recombination protein A Machinery gene
  RG879_RS09865 - 1941352..1942473 (-) 1122 WP_000257254.1 site-specific integrase -
  RG879_RS09870 - 1942523..1942849 (-) 327 WP_001188031.1 DUF771 domain-containing protein -
  RG879_RS09875 - 1943042..1943674 (-) 633 WP_000578744.1 hypothetical protein -
  RG879_RS09880 - 1943750..1944292 (-) 543 WP_000935941.1 hypothetical protein -
  RG879_RS11125 - 1944515..1944643 (-) 129 Protein_1877 cell wall anchor protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46611.03 Da        Isoelectric Point: 6.6718

>NTDB_id=802625 RG879_RS09855 WP_000774765.1 1939648..1940916(+) (rarA) [Streptococcus agalactiae strain Alim_agalac_1000]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMNAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=802625 RG879_RS09855 WP_000774765.1 1939648..1940916(+) (rarA) [Streptococcus agalactiae strain Alim_agalac_1000]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGAATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588