Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L6484_RS19275 Genome accession   NZ_AP022964
Coordinates   3790912..3791691 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus strain J62     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3785912..3796691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6484_RS19250 (BCJMU62_3831) uppS 3786656..3787432 (-) 777 WP_000971301.1 isoprenyl transferase -
  L6484_RS19255 (BCJMU62_3832) frr 3787518..3788075 (-) 558 WP_000531503.1 ribosome recycling factor -
  L6484_RS19260 (BCJMU62_3833) pyrH 3788078..3788800 (-) 723 WP_000042663.1 UMP kinase -
  L6484_RS19265 (BCJMU62_3834) tsf 3788867..3789754 (-) 888 WP_001018581.1 translation elongation factor Ts -
  L6484_RS19270 (BCJMU62_3835) rpsB 3789858..3790559 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  L6484_RS19275 (BCJMU62_3836) codY 3790912..3791691 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L6484_RS19280 (BCJMU62_3837) hslU 3791769..3793160 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  L6484_RS19285 (BCJMU62_3838) hslV 3793183..3793725 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  L6484_RS19290 (BCJMU62_3839) xerC 3793768..3794667 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  L6484_RS19295 (BCJMU62_3840) trmFO 3794733..3796037 (-) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=80252 L6484_RS19275 WP_000421288.1 3790912..3791691(-) (codY) [Bacillus cereus strain J62]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=80252 L6484_RS19275 WP_000421288.1 3790912..3791691(-) (codY) [Bacillus cereus strain J62]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAGGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment