Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | P3T96_RS07920 | Genome accession | NZ_CP120060 |
| Coordinates | 1512174..1513076 (+) | Length | 300 a.a. |
| NCBI ID | WP_096791887.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain Dog127_S | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1507174..1518076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3T96_RS07880 (P3T96_07880) | - | 1507258..1507812 (+) | 555 | WP_096791884.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| P3T96_RS07885 (P3T96_07885) | - | 1507813..1509261 (+) | 1449 | WP_096791885.1 | rhomboid family protein | - |
| P3T96_RS07890 (P3T96_07890) | - | 1509266..1509457 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| P3T96_RS07895 (P3T96_07895) | - | 1509454..1510425 (+) | 972 | WP_096791886.1 | ROK family glucokinase | - |
| P3T96_RS07900 (P3T96_07900) | - | 1510425..1510739 (+) | 315 | WP_058611614.1 | MTH1187 family thiamine-binding protein | - |
| P3T96_RS07905 (P3T96_07905) | - | 1510769..1511008 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| P3T96_RS07910 (P3T96_07910) | - | 1511106..1511738 (+) | 633 | WP_058611613.1 | MBL fold metallo-hydrolase | - |
| P3T96_RS07915 (P3T96_07915) | - | 1511772..1512020 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| P3T96_RS07920 (P3T96_07920) | comGA | 1512174..1513076 (+) | 903 | WP_096791887.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| P3T96_RS07925 (P3T96_07925) | comGB | 1513066..1514106 (+) | 1041 | WP_196968298.1 | competence type IV pilus assembly protein ComGB | - |
| P3T96_RS07930 (P3T96_07930) | comGC | 1514121..1514438 (+) | 318 | WP_058611611.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| P3T96_RS07935 (P3T96_07935) | - | 1514467..1514865 (+) | 399 | WP_049319406.1 | hypothetical protein | - |
| P3T96_RS07940 (P3T96_07940) | comGE | 1514849..1515130 (+) | 282 | WP_196968297.1 | competence type IV pilus minor pilin ComGE | - |
| P3T96_RS07945 (P3T96_07945) | - | 1515105..1515539 (+) | 435 | WP_323705719.1 | competence type IV pilus minor pilin ComGF | - |
| P3T96_RS07950 (P3T96_07950) | - | 1515774..1516262 (+) | 489 | WP_323705720.1 | shikimate kinase | - |
| P3T96_RS07955 (P3T96_07955) | gcvT | 1516455..1517543 (+) | 1089 | WP_323713005.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34419.32 Da Isoelectric Point: 6.1198
>NTDB_id=802393 P3T96_RS07920 WP_096791887.1 1512174..1513076(+) (comGA) [Mammaliicoccus sciuri strain Dog127_S]
MEKLFKSIINDAINSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
MEKLFKSIINDAINSNASDIHFVPLNDDKVFVQMRINGDNIPYDLDLDFNLYSRLLIYMKFIAHLDVSERNKAQSGQYLF
EHDIHYYLRISTIPISLGIESSSIRITPQHFNHSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDITAKQVIQASLSGHLVLSTMHASD
TIGAIHRLVELGVTVEQIKQGISCITNQRLVKKCDEARTLDMSYIFKDDIIKYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=802393 P3T96_RS07920 WP_096791887.1 1512174..1513076(+) (comGA) [Mammaliicoccus sciuri strain Dog127_S]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTATCAATTCTAATGCGAGTGATATTCACTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGATTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTATCAATTCTAATGCGAGTGATATTCACTTTGTACCTTTAAACGA
TGATAAAGTCTTTGTCCAAATGAGGATAAATGGCGATAATATACCTTATGATTTAGATTTAGATTTTAATTTGTATAGTA
GGCTACTTATTTATATGAAATTTATCGCTCATCTAGATGTAAGTGAACGAAATAAAGCACAAAGTGGTCAATATTTATTT
GAACATGACATACATTACTATTTAAGAATTTCCACGATACCTATCAGTTTAGGGATAGAATCTAGTTCCATTAGAATAAC
CCCTCAACATTTTAATCATTCACAAGTGAAATCAGAGCATCAATCATATAACGTTCTACAAAACAGAATGTATCAATCAG
AAGGGCTATTTTTATTTACGGGTCCAACTGGATCAGGTAAGACTACATTAATGTATGAACTTATGTACGCATTAAAGAGA
GAGAAGAATAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCGGACGTTATTATGATTGGAGAGATAA
GAGATGATATTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCATGCGAGTGAT
ACAATCGGGGCAATCCACCGACTAGTTGAGCTAGGTGTAACAGTCGAACAAATTAAACAAGGTATTTCATGTATTACGAA
CCAACGTCTTGTGAAGAAATGTGATGAAGCAAGAACATTAGATATGTCCTATATTTTTAAAGATGACATTATTAAATATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.5 |
93.333 |
0.49 |
| comGA | Staphylococcus aureus N315 |
52.5 |
93.333 |
0.49 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |
| pilB | Haemophilus influenzae Rd KW20 |
35.032 |
100 |
0.367 |