Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RIF20_RS05480 Genome accession   NZ_CP134068
Coordinates   1073337..1074611 (-) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1068337..1079611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS05455 (RIF20_05455) hisS 1068898..1070160 (+) 1263 WP_268560750.1 histidine--tRNA ligase -
  RIF20_RS05460 (RIF20_05460) aspS 1070176..1071942 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  RIF20_RS05470 (RIF20_05470) - 1072275..1072403 (+) 129 WP_001808243.1 hypothetical protein -
  RIF20_RS05475 (RIF20_05475) - 1072403..1073176 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  RIF20_RS05480 (RIF20_05480) rarA 1073337..1074611 (-) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  RIF20_RS05485 (RIF20_05485) cymR 1074696..1075118 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  RIF20_RS05490 (RIF20_05490) - 1075218..1075400 (+) 183 WP_000752909.1 CsbD family protein -
  RIF20_RS05495 (RIF20_05495) - 1075440..1075586 (+) 147 WP_000009238.1 SAS049 family protein -
  RIF20_RS05500 (RIF20_05500) - 1075823..1076836 (-) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  RIF20_RS05505 (RIF20_05505) - 1077148..1078290 (+) 1143 WP_000409174.1 cysteine desulfurase family protein -
  RIF20_RS05510 (RIF20_05510) mnmA 1078291..1079409 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=802251 RIF20_RS05480 WP_000102740.1 1073337..1074611(-) (rarA) [Staphylococcus aureus strain 63]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=802251 RIF20_RS05480 WP_000102740.1 1073337..1074611(-) (rarA) [Staphylococcus aureus strain 63]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCTTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686